Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1302
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 RIRALRTLQKEFVDIEAKFYSEVH 326
           R+ AL+ LQ + + IE+ FY  VH
Sbjct: 29  RVCALKNLQMKTIQIESDFYKRVH 52


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 332 ECMYFTVKLGLNVDKLL 282
           EC++ + K GLNVDK+L
Sbjct: 188 ECLHISAKSGLNVDKVL 204


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
           protein Y51H7BM.1 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 581 ICCTKSLGYPLHW 543
           +CC K LGYP +W
Sbjct: 52  LCCEKELGYPSNW 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,530,723
Number of Sequences: 27780
Number of extensions: 255254
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)