BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1302 (601 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 1.7 DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 3.0 DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 4.0 DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 22 5.3 DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 22 5.3 DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 7.0 AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 7.0 AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 7.0 AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 7.0 DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 9.2 AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 21 9.2 AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 9.2 >AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. Length = 898 Score = 23.4 bits (48), Expect = 1.7 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 336 IRVHVLHCKTWPQCRQTPSEEFSRRGFATNIRG*GCH 226 ++ HVL T P+ + TP + R NIR CH Sbjct: 391 VQTHVLTIHTIPEVKVTPRFQAKRLKEEANIR---CH 424 >DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 510 Score = 22.6 bits (46), Expect = 3.0 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 491 DGSILYRPRLTLLFQC 444 DG ILY RLT+ +C Sbjct: 147 DGDILYSMRLTIKAKC 162 >DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. Length = 552 Score = 22.2 bits (45), Expect = 4.0 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +2 Query: 416 DECLNPWRDDTEKEELASGG 475 DEC W D+ K ++A GG Sbjct: 254 DECDRLWILDSGKVDIAKGG 273 >DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. Length = 828 Score = 21.8 bits (44), Expect = 5.3 Identities = 7/17 (41%), Positives = 13/17 (76%) Frame = +2 Query: 419 ECLNPWRDDTEKEELAS 469 + L W DD+++EEL++ Sbjct: 34 QMLGIWADDSDEEELSA 50 >DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. Length = 471 Score = 21.8 bits (44), Expect = 5.3 Identities = 7/22 (31%), Positives = 12/22 (54%) Frame = -1 Query: 451 FSVITPWVETFIIIRFICAIHN 386 + ITP ++ + I C +HN Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333 >DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel protein. Length = 463 Score = 21.4 bits (43), Expect = 7.0 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -3 Query: 509 FFLTLSDGSILYRPRLTLLFQC 444 F DG +LY RLT+ C Sbjct: 109 FVRLYQDGRVLYSSRLTIKAGC 130 >AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. Length = 712 Score = 21.4 bits (43), Expect = 7.0 Identities = 8/27 (29%), Positives = 15/27 (55%) Frame = +2 Query: 398 TYEPNDDECLNPWRDDTEKEELASGGT 478 T E + D+CL +++ + SGG+ Sbjct: 418 TLEKSQDDCLKAIKENNADLTVVSGGS 444 >AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. Length = 712 Score = 21.4 bits (43), Expect = 7.0 Identities = 8/27 (29%), Positives = 15/27 (55%) Frame = +2 Query: 398 TYEPNDDECLNPWRDDTEKEELASGGT 478 T E + D+CL +++ + SGG+ Sbjct: 418 TLEKSQDDCLKAIKENNADLTVVSGGS 444 >AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. Length = 712 Score = 21.4 bits (43), Expect = 7.0 Identities = 8/27 (29%), Positives = 15/27 (55%) Frame = +2 Query: 398 TYEPNDDECLNPWRDDTEKEELASGGT 478 T E + D+CL +++ + SGG+ Sbjct: 418 TLEKSQDDCLKAIKENNADLTVVSGGS 444 >DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride channel protein. Length = 383 Score = 21.0 bits (42), Expect = 9.2 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -3 Query: 521 PCHPFFLTLSDGSILYRPRLTLLFQC 444 P H +L D ++LY +LTL+ C Sbjct: 108 PNHYLWL-YHDKTLLYMSKLTLVLSC 132 >AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase protein. Length = 510 Score = 21.0 bits (42), Expect = 9.2 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 271 ELFRRSLSTLRPSFTVKY 324 E FRR +ST+ F V+Y Sbjct: 451 EKFRRWVSTMSRPFEVRY 468 >AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera ORF for hypotheticalprotein. ). Length = 998 Score = 21.0 bits (42), Expect = 9.2 Identities = 8/23 (34%), Positives = 14/23 (60%) Frame = -1 Query: 544 GIHWRLDSLVILFSSPSVMAAFC 476 G+ W L L +LF++ + +FC Sbjct: 132 GLGWLLLMLYLLFATLPLRLSFC 154 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 160,474 Number of Sequences: 438 Number of extensions: 2972 Number of successful extensions: 12 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 17604432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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