Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1302
(601 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 1.7
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 3.0
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 4.0
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 22 5.3
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 22 5.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 7.0
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 7.0
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 7.0
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 7.0
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 9.2
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 21 9.2
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 9.2
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.4 bits (48), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 336 IRVHVLHCKTWPQCRQTPSEEFSRRGFATNIRG*GCH 226
++ HVL T P+ + TP + R NIR CH
Sbjct: 391 VQTHVLTIHTIPEVKVTPRFQAKRLKEEANIR---CH 424
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.6 bits (46), Expect = 3.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 491 DGSILYRPRLTLLFQC 444
DG ILY RLT+ +C
Sbjct: 147 DGDILYSMRLTIKAKC 162
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 416 DECLNPWRDDTEKEELASGG 475
DEC W D+ K ++A GG
Sbjct: 254 DECDRLWILDSGKVDIAKGG 273
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 21.8 bits (44), Expect = 5.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 419 ECLNPWRDDTEKEELAS 469
+ L W DD+++EEL++
Sbjct: 34 QMLGIWADDSDEEELSA 50
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 21.8 bits (44), Expect = 5.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = -1
Query: 451 FSVITPWVETFIIIRFICAIHN 386
+ ITP ++ + I C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 509 FFLTLSDGSILYRPRLTLLFQC 444
F DG +LY RLT+ C
Sbjct: 109 FVRLYQDGRVLYSSRLTIKAGC 130
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 398 TYEPNDDECLNPWRDDTEKEELASGGT 478
T E + D+CL +++ + SGG+
Sbjct: 418 TLEKSQDDCLKAIKENNADLTVVSGGS 444
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 398 TYEPNDDECLNPWRDDTEKEELASGGT 478
T E + D+CL +++ + SGG+
Sbjct: 418 TLEKSQDDCLKAIKENNADLTVVSGGS 444
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 398 TYEPNDDECLNPWRDDTEKEELASGGT 478
T E + D+CL +++ + SGG+
Sbjct: 418 TLEKSQDDCLKAIKENNADLTVVSGGS 444
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 521 PCHPFFLTLSDGSILYRPRLTLLFQC 444
P H +L D ++LY +LTL+ C
Sbjct: 108 PNHYLWL-YHDKTLLYMSKLTLVLSC 132
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 21.0 bits (42), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 271 ELFRRSLSTLRPSFTVKY 324
E FRR +ST+ F V+Y
Sbjct: 451 EKFRRWVSTMSRPFEVRY 468
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 544 GIHWRLDSLVILFSSPSVMAAFC 476
G+ W L L +LF++ + +FC
Sbjct: 132 GLGWLLLMLYLLFATLPLRLSFC 154
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,474
Number of Sequences: 438
Number of extensions: 2972
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -