Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1302
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    32   0.25 
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    30   1.0  
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    28   4.1  
At3g24430.1 68416.m03066 expressed protein contains Pfam profile...    28   5.4  
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ...    27   7.2  

>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 205 NRLHAEAM-ASLPPNVRRESAP*ELFRRSLSTLRPSFTVKYMHSNA 339
           N+ H++    + PPN RR+ AP   F   ++  RP+F V+ +H  A
Sbjct: 48  NQQHSQYHNTNFPPNYRRDRAPSSGFSPPVTRARPNFIVQLLHPAA 93


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to RNA-dependent ATPase/helicase Cdc28p
           [Schizosaccharomyces pombe] GI:1439562; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, weak hit
           to PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1775

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 205 NRLHAE-AMASLPPNVRRESAP*ELFRRSLSTLRPSFTVKYMHSNANMKNFTSLFIKKRR 381
           N+ H++   ++ PPN RR+  P   +   ++  RP+F V+ +H  A   +    F  K++
Sbjct: 48  NQQHSQYPNSNFPPNYRRDRNPSSGYSPPVTRARPNFIVQLLHPAAANSDTKLCFSTKKQ 107


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 237 TPECSSRIRALRTLQKEFVDIEAKFYSE 320
           TP    R+ ALR +Q +  ++EAKF  E
Sbjct: 48  TPNVRKRVDALRDIQSQHDELEAKFREE 75


>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 532

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 238 PPNVRRESAP*ELFRRSLSTLRPSFTVKYMHSNANMKNFTSLFIKKRRS 384
           P ++R  S   +  RRS ST R   + K++HS A++ + +   I KR S
Sbjct: 6   PQSLRHPSFEIQTQRRSNSTTRLLLSHKFLHSQASIISISRTRILKRVS 54


>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
           subunit ClpX1 (CLPX) identical to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]
          Length = 579

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 ITNRLHAEAMASLPPNVRRESAP*ELFRRSLSTLRPSF 312
           I NR+H    A+ PP+    S   E F   +S+L  SF
Sbjct: 25  IFNRIHTARTATSPPHCNHRSKSDEKFPYKISSLGTSF 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,816
Number of Sequences: 28952
Number of extensions: 237297
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)