Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1301
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    25   0.39 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.1  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   4.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.4  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -2

Query: 366 LLFLLHNNTCW--MLSSGFFGSFCPR--QLYFQWLLCQLLEYAVCVY 238
           LL  L++   W  +L  G+F  +     QLYFQ+     L   VC++
Sbjct: 123 LLVALYSGYVWTDILGFGYFREYLAEAVQLYFQFYYTYFLCVIVCIF 169


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 369 DTEMTTQSVASQLELQRLHTGRT 437
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 369 DTEMTTQSVASQLELQRLHTGRT 437
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 369 DTEMTTQSVASQLELQRLHTGRT 437
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 428 WTYCTSRNXCHTAETNAISLSRPYRGC 508
           W Y  SR   H +  +  S +  Y GC
Sbjct: 84  WVYYESRAHIHCSVKSESSQAAKYGGC 110


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 336 WMLSSGFFGSFCPRQLYFQWL 274
           ++L  GFF +     +YF+WL
Sbjct: 568 FLLFGGFFLNVSSIPIYFKWL 588


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 336 WMLSSGFFGSFCPRQLYFQWL 274
           ++L  GFF +     +YF+WL
Sbjct: 568 FLLFGGFFLNVSSIPIYFKWL 588


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 381 SFQCQLLFLLHNNTCWMLSSGFFGSFC 301
           +FQ  ++ + HN +C  +  G F S C
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTC 128


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 381 SFQCQLLFLLHNNTCWMLSSGFFGSFC 301
           +FQ  ++ + HN +C  +  G F S C
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTC 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,488
Number of Sequences: 336
Number of extensions: 3584
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)