Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1301
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...   107   1e-24
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    55   1e-08
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    31   0.14 
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    31   0.18 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   6.7  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.9  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   8.9  

>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score =  107 bits (258), Expect = 1e-24
 Identities = 55/123 (44%), Positives = 73/123 (59%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           +LGADTRAT   +++DKNC+K+H ++ N++C GAGTAADTE  T  ++S +EL  L+T R
Sbjct: 48  VLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNR 107

Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWFWEVFDRTGLIFTAFILMDL*INYHMQPWGSGSL 614
                T  T+LK+ LFRYQGHIGA      +D  G                    GSGSL
Sbjct: 108 KPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSL 167

Query: 615 AAM 623
           AA+
Sbjct: 168 AAI 170



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = +1

Query: 139 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYAD 249
           GF FE +QRN  L +KGFP PKAT TGTTIVG+I  D
Sbjct: 9   GFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKD 45


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           IL AD+R T    ++++   K+  L  N++CC +G+AADT+     +   L + R+  G 
Sbjct: 37  ILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGH 96

Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWFWEVFD-RTG 539
                T ATL   M ++ +  + A      +D +TG
Sbjct: 97  DPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTG 132


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQSVASQLELQRLHT 428
           ++  D+RA+   +++ +  +K+  +  N Y  G  AG AAD +     +  +  L +L  
Sbjct: 74  VVCVDSRASAGPLIASQTVKKV--IEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRN 131

Query: 429 GRTVPAETXATLLKRMLFRYQGH 497
              +     + +L  + + Y+G+
Sbjct: 132 KELISVSAASKILSNITYSYKGY 154


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 14/76 (18%), Positives = 38/76 (50%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           IL  DTR+     ++ +   ++H +  ++    +G  AD     + +  +++L   +  R
Sbjct: 26  ILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHER 85

Query: 435 TVPAETXATLLKRMLF 482
            + A++ A +++ +L+
Sbjct: 86  KMSAQSCACMVRTLLY 101


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/80 (21%), Positives = 36/80 (45%)
 Frame = -2

Query: 480 IAFVSAVWXQFLLVQYVQYVSAATPIVKQQIVLSFQCQLLFLLHNNTCWMLSSGFFGSFC 301
           +AFVSA    F  +   +Y   ++      + +SF  + + ++    C +   G   ++ 
Sbjct: 150 LAFVSAASNIFEWLSATRYYPQSS-----LLRVSFIFKFVIIVVGIICAIAFGGLHHNYR 204

Query: 300 PRQLYFQWLLCQLLEYAVCV 241
            R   F+W++C L    +C+
Sbjct: 205 GRSARFEWVVCFLWSIYICL 224


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 575 LQIHEDKCSKYEAGSVKHLPKPGSPYMALIAK*HSFQQCGXSFCW 441
           L +  D  SK+    V+   +P SPY+   +    F  C  S  W
Sbjct: 109 LILERDAPSKFSIELVEERREPESPYLLFFSNSSRFSACEESGEW 153


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 88  LSNHEMASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKT-GTTIVGIIYADGVF 258
           L  H   S   P +    + F NF+ N+F+  + + AP+  ++ G T+    +  G+F
Sbjct: 315 LPKHSTFSQEKPALDTNSY-FSNFRTNSFVGTEEYIAPEVIRSCGHTVAVDWWTLGIF 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,197
Number of Sequences: 5004
Number of extensions: 54175
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)