BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1301 (625 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 124 6e-29 06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 48 6e-06 02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 47 1e-05 11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 29 3.0 07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451 27 9.2 >05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019, 5279130-5279199,5279284-5279388,5279531-5279629, 5280062-5280152,5280238-5280311 Length = 272 Score = 124 bits (299), Expect = 6e-29 Identities = 66/123 (53%), Positives = 75/123 (60%) Frame = +3 Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434 +LGADTRATE +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR Sbjct: 51 VLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGR 110 Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWFWEVFDRTGLIFTAFILMDL*INYHMQPWGSGSL 614 T TLLK LF YQGH+ AA D TG GSGSL Sbjct: 111 ESRVVTSLTLLKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSL 170 Query: 615 AAM 623 AAM Sbjct: 171 AAM 173 Score = 53.2 bits (122), Expect = 2e-07 Identities = 23/42 (54%), Positives = 29/42 (69%) Frame = +1 Query: 130 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGV 255 P GFS++N RNA L +KG P KTGTTIVG+++ DGV Sbjct: 9 PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGV 50 >06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407, 2091792-2091903,2092036-2092108,2092291-2092346, 2092679-2092755,2093384-2093525 Length = 246 Score = 48.0 bits (109), Expect = 6e-06 Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Frame = +3 Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434 +L AD+R + V+++ KI L N+Y C +G+AADT++ ++ V L + G+ Sbjct: 38 VLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQ 97 Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWF---WEVFDRTGLIFT 551 + A L++ + ++ + + A W+ ++ G IF+ Sbjct: 98 PATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYE-GGQIFS 138 >02_05_0884 - 32483735-32483866,32484417-32484491,32484707-32484780, 32485180-32485291,32485476-32485548,32485674-32485729, 32486046-32486122,32486799-32486940 Length = 246 Score = 47.2 bits (107), Expect = 1e-05 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Frame = +3 Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434 +L AD+R + V+++ KI L N+Y C +G+AADT++ + V L + G+ Sbjct: 38 VLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQ 97 Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWF---WEVFDRTGLIFT 551 + A L++ + ++ + + A W+ ++ G IF+ Sbjct: 98 PATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYE-GGQIFS 138 >11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985, 2774303-2774459,2774577-2775000,2775238-2776030, 2776182-2776241,2776952-2777593 Length = 820 Score = 29.1 bits (62), Expect = 3.0 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +3 Query: 225 NCWYNIRRRRILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQ 404 N W ++ RR + + T A+EN S+ H A+ G +D E QS S+ Sbjct: 81 NLWQHVWRRHAMNSQTNASENNAASN------HLSANGGNGSKTGEHSDEESDAQSSGSK 134 Query: 405 LELQ 416 E++ Sbjct: 135 REVE 138 >07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451 Length = 511 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +3 Query: 168 CFSCSERVSCTQSHQDRYYNCWYNIRRRRILGAD 269 CF C E++ T SH Y CW R++ D Sbjct: 382 CFQCLEKLYITASHYGATY-CWRRKHWRKLKSLD 414 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,114,761 Number of Sequences: 37544 Number of extensions: 358681 Number of successful extensions: 745 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 744 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1513903616 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -