Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1301
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527...   124   6e-29
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209...    48   6e-06
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847...    47   1e-05
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277...    29   3.0  
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     27   9.2  

>05_01_0588 +
           5278013-5278153,5278641-5278782,5278923-5279019,
           5279130-5279199,5279284-5279388,5279531-5279629,
           5280062-5280152,5280238-5280311
          Length = 272

 Score =  124 bits (299), Expect = 6e-29
 Identities = 66/123 (53%), Positives = 75/123 (60%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           +LGADTRATE  +V+DKNC+KIHY+A N+YCCGAGTAADTE  T  V+SQL+L R  TGR
Sbjct: 51  VLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGR 110

Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWFWEVFDRTGLIFTAFILMDL*INYHMQPWGSGSL 614
                T  TLLK  LF YQGH+ AA      D TG                    GSGSL
Sbjct: 111 ESRVVTSLTLLKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSL 170

Query: 615 AAM 623
           AAM
Sbjct: 171 AAM 173



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +1

Query: 130 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGV 255
           P  GFS++N  RNA L +KG   P   KTGTTIVG+++ DGV
Sbjct: 9   PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGV 50


>06_01_0285 -
           2090427-2090558,2091045-2091119,2091334-2091407,
           2091792-2091903,2092036-2092108,2092291-2092346,
           2092679-2092755,2093384-2093525
          Length = 246

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           +L AD+R +    V+++   KI  L  N+Y C +G+AADT++ ++ V   L    +  G+
Sbjct: 38  VLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQ 97

Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWF---WEVFDRTGLIFT 551
               +  A L++ + ++ +  + A      W+ ++  G IF+
Sbjct: 98  PATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYE-GGQIFS 138


>02_05_0884 -
           32483735-32483866,32484417-32484491,32484707-32484780,
           32485180-32485291,32485476-32485548,32485674-32485729,
           32486046-32486122,32486799-32486940
          Length = 246

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           +L AD+R +    V+++   KI  L  N+Y C +G+AADT++ +  V   L    +  G+
Sbjct: 38  VLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQ 97

Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWF---WEVFDRTGLIFT 551
               +  A L++ + ++ +  + A      W+ ++  G IF+
Sbjct: 98  PATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYE-GGQIFS 138


>11_01_0361 +
           2772193-2772334,2773457-2773587,2773872-2773985,
           2774303-2774459,2774577-2775000,2775238-2776030,
           2776182-2776241,2776952-2777593
          Length = 820

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 225 NCWYNIRRRRILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQ 404
           N W ++ RR  + + T A+EN   S+      H  A+       G  +D E   QS  S+
Sbjct: 81  NLWQHVWRRHAMNSQTNASENNAASN------HLSANGGNGSKTGEHSDEESDAQSSGSK 134

Query: 405 LELQ 416
            E++
Sbjct: 135 REVE 138


>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 168 CFSCSERVSCTQSHQDRYYNCWYNIRRRRILGAD 269
           CF C E++  T SH    Y CW     R++   D
Sbjct: 382 CFQCLEKLYITASHYGATY-CWRRKHWRKLKSLD 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,114,761
Number of Sequences: 37544
Number of extensions: 358681
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)