Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1301
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_41330| Best HMM Match : Destabilase (HMM E-Value=5) 30 1.3
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 28 5.4
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09) 27 9.4
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQSVASQLELQRLHT 428
I+ D+RAT + ++ + +K+ + N Y G AG AAD + +A Q + L
Sbjct: 41 IVAVDSRATAGSYIASQTVKKV--IEINPYLLGTMAGGAADCSFWERLLAKQCRIYELRN 98
Query: 429 GRTVPAETXATLLKRMLFRYQG 494
+ + +L M++ Y+G
Sbjct: 99 KERISVAAASKILANMVYYYKG 120
>SB_41330| Best HMM Match : Destabilase (HMM E-Value=5)
Length = 499
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C R A +RP+ L RPH+ + + P+A M
Sbjct: 77 LTHWATCGERPHADMLTHWATCGNRPHADMLTHWATCGERPHVDMLTHWATCGNRPHADM 136
Query: 599 -GIWISCG 619
W++CG
Sbjct: 137 LTHWVTCG 144
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C R A +RP+ L NRPH + + + P+A M
Sbjct: 32 LTHWVTCGERPHADMLTHWATCGNRPHADMLTHWATCGNRPHADMLTHWATCGERPHADM 91
Query: 599 -GIWISCG 619
W +CG
Sbjct: 92 LTHWATCG 99
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C +R A RP+ L NRPH + + + P+A M
Sbjct: 152 LTHWATCGNRPHADMLTHWATCGERPHADMLTHWATCGNRPHADMLTHWATCGERPHADM 211
Query: 599 -GIWISCG 619
W +CG
Sbjct: 212 LTHWATCG 219
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C +R A RP+ L NRPH + + + P+A M
Sbjct: 182 LTHWATCGNRPHADMLTHWATCGERPHADMLTHWATCGNRPHADMLTHWATCGERPHADM 241
Query: 599 -GIWISCG 619
W +CG
Sbjct: 242 LTHWATCG 249
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C R A +RP+ L RPH + + + P+A M
Sbjct: 197 LTHWATCGERPHADMLTHWATCGNRPHADMLTHWATCGERPHADMLTHWATCGERPHADM 256
Query: 599 -GIWISCG 619
W++CG
Sbjct: 257 LTHWVTCG 264
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C +R A RP+ L NRPH + + + P+ M
Sbjct: 62 LTHWATCGNRPHADMLTHWATCGERPHADMLTHWATCGNRPHADMLTHWATCGERPHVDM 121
Query: 599 -GIWISCG 619
W +CG
Sbjct: 122 LTHWATCG 129
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C +R A RP+ L NRPH + + + P+A M
Sbjct: 92 LTHWATCGNRPHADMLTHWATCGERPHVDMLTHWATCGNRPHADMLTHWVTCGERPHADM 151
Query: 599 -GIWISCG 619
W +CG
Sbjct: 152 LTHWATCG 159
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 LTYWTYCTSRNXCHTAETNAISLSRPYRGCLVLGGV*QNRPHIYCIYPHGSVDKLPYATM 598
LT+W C +R A +RP+ L RPH + + P+A M
Sbjct: 47 LTHWATCGNRPHADMLTHWATCGNRPHADMLTHWATCGERPHADMLTHWATCGNRPHADM 106
Query: 599 -GIWISCG 619
W +CG
Sbjct: 107 LTHWATCG 114
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 348 CGAGTAADTEMTTQSVASQLELQR 419
C GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 369 DTEMTTQSVASQLELQRLHT--GRTVPAETXATLLKRMLFRYQGH 497
D + V S E+ RLHT GR+ P E LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 616 ARDPDPHGCIW*FIYRSMRINAVNMRPVL-SNTSQNQAAP 500
A DPDP+G + + RS ++ N PV SN QN P
Sbjct: 274 AEDPDPNGSVKDDMDRSAPVSRSNPSPVFPSNKQQNFPTP 313
>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
Length = 418
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 545 YEAGSVKHLPKPGSPYMAL 489
Y++ K+ PKPGSPY L
Sbjct: 394 YQSEDCKYAPKPGSPYQTL 412
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 354 AGTAADTEMTTQSVASQLELQRLHTGRTVPAETXATLLKRMLFRYQGHI 500
+G + +TT SVASQL+ + +T RT+ + AT + M+ GH+
Sbjct: 753 SGQVPSSGLTTSSVASQLQ-TKTNTVRTISRPSTATTVS-MVRTLPGHL 799
>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
Length = 355
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = -2
Query: 528 QTPPKTRQPLYGLDSEIAFVSAVWXQFL--LVQYVQYVSAATPIVKQQIVLSFQCQLLFL 355
+ PP+ P+ + F ++ FL VQY + S +V + + +FL
Sbjct: 258 EVPPQW--PIIFIGLVAGFFGSIIDSFLGATVQYSGFCSVKKHVVNRPTATAKHISGIFL 315
Query: 354 LHNNTCWMLSSGFFGSFCPRQLYFQW 277
L N+ ++SS G P Y+ W
Sbjct: 316 LDNHAVNLVSSAVTGFAMPIFGYYVW 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,560,567
Number of Sequences: 59808
Number of extensions: 402678
Number of successful extensions: 1102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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