Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1301
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    91   6e-19
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    42   3e-04
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   8.2  

>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 47/123 (38%), Positives = 68/123 (55%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           ++GAD+RAT   +++DK+C+K+H L  ++Y CGAGTAAD +  T+ ++  L L  L+TGR
Sbjct: 59  VMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGR 118

Query: 435 TVPAETXATLLKRMLFRYQGHIGAAWFWEVFDRTGLIFTAFILMDL*INYHMQPWGSGSL 614
                T     K+ LF YQG+IGA       D TG            + +     GSGS 
Sbjct: 119 KARVITALRQAKQHLFNYQGYIGAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSY 178

Query: 615 AAM 623
           AA+
Sbjct: 179 AAI 181



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 142 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGV 255
           F F N  RN  + + G  APK T TGTTIV + +  G+
Sbjct: 21  FDFSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGL 58


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/85 (20%), Positives = 42/85 (49%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           ++G D+R +  + ++ +   KI  +  NM  C +G+AADT+         +++  +   +
Sbjct: 36  VVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIAKYHIDVYTMTENK 95

Query: 435 TVPAETXATLLKRMLFRYQGHIGAA 509
            V     + + ++ L+ Y+  + A+
Sbjct: 96  PVTIYRSSQIFRQFLYNYREQLSAS 120


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +3

Query: 255 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 434
           I+  D+RA+    +S K+  KI  +   M    AG AAD +  T+ VA    L  L    
Sbjct: 84  IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143

Query: 435 TVPAETXATLLKRMLFRYQG 494
           ++     +      L+ Y+G
Sbjct: 144 SITVSAASKYFANTLYGYRG 163


>Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical
           protein F40G12.2 protein.
          Length = 265

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 291 VVSDKNCQKIHYLASNMYCC 350
           V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 234 TNNCSTGLGGFGCRKP 187
           T+ CS GLGGFG  +P
Sbjct: 96  TSQCSPGLGGFGVYRP 111


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 317  FLAVFVRDNCIFSGSCVSS*NTPSAYIIPTIVVPVLVALG 198
            F  V V+  C+ S  C+ +  TPS   +P I+  +LV +G
Sbjct: 3154 FSPVVVQRQCLNSLECIFASFTPSNVEVPKIIRNLLVVVG 3193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,743,364
Number of Sequences: 27780
Number of extensions: 313877
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)