Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1300
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 5e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 102 5e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 79 6e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 2e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 50 2e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 2e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 3e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 33 0.029
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.15
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 31 0.15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.35
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 3.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.8
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 26 5.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (426), Expect = 5e-45
Identities = 78/84 (92%), Positives = 82/84 (97%)
Frame = +2
Query: 2 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 182 RGILTLKYPIEHGIVTNWDDMEKI 253
RGILTLKYPIEHGIV NWDDMEKI
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKI 85
Score = 100 bits (239), Expect = 2e-22
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = +1
Query: 511 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 651
LYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDY
Sbjct: 142 LYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDY 188
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +1
Query: 262 TFYNELRVAPEEHPVLLTEAPLNPKANR 345
TFYNELRVAPEEHP LLTEAPLNPK+NR
Sbjct: 89 TFYNELRVAPEEHPCLLTEAPLNPKSNR 116
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 435 REKMTQIMFETFNTPAMYVA 494
REKMTQI+FETFN PA YVA
Sbjct: 116 REKMTQIIFETFNAPAFYVA 135
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 102 bits (244), Expect = 5e-23
Identities = 44/78 (56%), Positives = 58/78 (74%)
Frame = +2
Query: 20 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 199
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 200 KYPIEHGIVTNWDDMEKI 253
+ PIE GI+ NW DME+I
Sbjct: 72 QRPIERGIIQNWSDMEEI 89
Score = 71.7 bits (168), Expect = 9e-14
Identities = 29/47 (61%), Positives = 41/47 (87%)
Frame = +1
Query: 511 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 651
LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDY
Sbjct: 147 LYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDY 193
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 274 ELRVAPEEHPVLLTEAPL 327
+L PEEHP+LLTE PL
Sbjct: 98 QLNTLPEEHPLLLTEPPL 115
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 79.0 bits (186), Expect = 6e-16
Identities = 38/84 (45%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 181
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 182 RGILTLKYPIEHGIVTNWDDMEKI 253
R +L +KYP+E+GI+ ++++M ++
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQL 85
Score = 66.1 bits (154), Expect = 4e-12
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +1
Query: 511 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 651
LYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T Y
Sbjct: 142 LYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRY 188
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 262 TFYNELRVAPEEHPVLLTEAPLNPKANR*VHRCRTM 369
TF+ +L++ P +LLTE P+NP ANR C TM
Sbjct: 89 TFFEKLKIDPRGRKILLTEPPMNPVANR-EKMCETM 123
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 57.6 bits (133), Expect = 2e-09
Identities = 44/128 (34%), Positives = 61/128 (47%)
Frame = +1
Query: 262 TFYNELRVAPEEHPVLLTEAPLNPKANR*VHRCRTMHFAFRPVGPYRPLSNE*LCSVSER 441
+ + LR PE+H LLTE PLNP NR + M +F G Y + + S
Sbjct: 112 SLFKYLRCEPEDHYFLLTEPPLNPPENR-ENTAEIMFESFNCAGLYIAVQAVLALAASW- 169
Query: 442 R*PRSCSKHSTRPPCTSHPSRAPLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 621
+ SK + R TG V+DSGDGV+H +P+ EGY + +I +
Sbjct: 170 ----TSSKVTDRS----------------LTGTVVDSGDGVTHIIPVAEGYVIGSSIKTM 209
Query: 622 DLAGRDLT 645
LAGRD+T
Sbjct: 210 PLAGRDVT 217
Score = 51.6 bits (118), Expect = 1e-07
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 24/101 (23%)
Frame = +2
Query: 20 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 148
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 149 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEK 250
D ++G++A K +L YPI HG + NWD ME+
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMER 107
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 435 REKMTQIMFETFNTPAMYVA 494
RE +IMFE+FN +Y+A
Sbjct: 139 RENTAEIMFESFNCAGLYIA 158
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 199
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 200 -KYPIEHGIVTNWDDMEKI 253
+ P E +++NWD ME++
Sbjct: 83 ARSPFERNVISNWDLMEQV 101
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 529 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 651
++GIVL+ G+ SH +P+ G + R+ G + Y
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSY 205
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +2
Query: 5 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 184
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 185 GILTLKYPIEHGIVTNWD 238
G + +K I +G V NWD
Sbjct: 62 G-MEIKNAIRNGWVENWD 78
Score = 30.3 bits (65), Expect(2) = 0.002
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 274 ELRVAPEEHPVLLTEAPLNPKANR*VHRCRTMHFAFRPVGPY 399
+L+ P EHP+L+TE NP NR V TM + R Y
Sbjct: 91 QLKTNPLEHPILITEPFDNPPENR-VKTLETMFESLRCPATY 131
Score = 25.8 bits (54), Expect(2) = 0.002
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 514 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 648
+ASG+ T ++D G S IY+G+ L +G + D
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAIND 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +2
Query: 5 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 184
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 185 GI--LTLKYPIEHGIVTNWD 238
I + +K +GI+ +W+
Sbjct: 62 PIPGMEVKNGKSNGIIQDWE 81
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 33.5 bits (73), Expect = 0.029
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 538 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 651
+V+DSG +H +P+ + A+ R+D+ G+ LT+Y
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNY 196
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 65 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 208
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 511 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 651
LYA G G+V+D G + PI +G + A +L L GR +T +
Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQH 234
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 162 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 1
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 173 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 84
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 202 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 23
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 530 PPVSCWTPATVSPTPCPSTKDTHSP 604
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 473 HARHVRRIQAVLRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 604
H R ++ +Q + + P S TP + T P+T DTH P
Sbjct: 260 HYRQLQSVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPP 303
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 165 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 49
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 202 FEGQDTSFALCLISYIRVLLSHTDHHA 122
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/52 (21%), Positives = 22/52 (42%)
Frame = +2
Query: 230 NWDDMEKICIIPSTMSCVSPPRNTQSCSLRLPSTPRPTGEFIDAGLCTLPFG 385
+W+ +EK + P + C++ P ++ S+ P T + L G
Sbjct: 354 DWNKLEKRMLPPPIVPCITNPEAAENFSVEFTKLPLSTTPILHEEFGNLTIG 405
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 521 PVVPPVSCWTPATVSPTPCPSTKDTHSPTP 610
P VP S P+ P P PS++ P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,685
Number of Sequences: 5004
Number of extensions: 72721
Number of successful extensions: 254
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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