Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1300
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 402 SIRAHRPKGKVHSPASMNSP 343
           ++R HR +G VH+ ++  SP
Sbjct: 304 TLRIHRGRGSVHNGSNNGSP 323


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 466 HSTRPPCTSHPSRAPLYASGRTTGI 540
           H   PP   H S APL A+    G+
Sbjct: 511 HHVAPPSGHHASSAPLLAATLAGGL 535


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 483 MYVASKPCSAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHSASGLSRSXP 641
           +Y  ++   ++  +++HR        C P   +L +I + P H  +  S S P
Sbjct: 53  LYSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 474 TPAMYVASKPCSAV 515
           TP +YV+++P SA+
Sbjct: 99  TPTVYVSNEPSSAI 112


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 41  GMCKAGFAGD 70
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,043
Number of Sequences: 438
Number of extensions: 5498
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)