Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1299
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.2  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.7  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 60  ICFQLKLKSKKL 95
           +CF LKLK+KKL
Sbjct: 524 MCFSLKLKNKKL 535


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 330 KYTYKLRRYFDLKTYCXG*PSYNA 401
           K   KLR  FDLKT     P + A
Sbjct: 269 KNAQKLRHKFDLKTLVLNFPKFTA 292


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 176 HTNSERTLYQSLTKAATFKFSLFINIQP 259
           H  +   L  +     T+  SLFIN+ P
Sbjct: 672 HVGNYTCLASNSASVTTYTTSLFINVPP 699


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 215 SLKTGKEFVLNSYAPD 168
           +L  G EF+ N + PD
Sbjct: 111 TLSVGSEFIKNIWVPD 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,701
Number of Sequences: 336
Number of extensions: 3056
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)