Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1299
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0694 - 6136025-6136749,6137425-6137971                           29   2.9  
06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624     29   2.9  
06_03_1446 - 30220158-30220278,30220866-30222229                       29   3.9  
06_03_1434 - 30139990-30140110,30140698-30142061                       29   3.9  
01_06_1495 + 37769982-37771496                                         29   3.9  
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680...    28   6.8  
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    27   8.9  
11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335           27   8.9  

>08_01_0694 - 6136025-6136749,6137425-6137971
          Length = 423

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 415 SVNYLA-LYDGXPXQYVFKSKYLLSL*VYFPLILIIIIMMQS 293
           +V+Y + LY G P   VF   Y+L+   + PL+LI++   +S
Sbjct: 62  AVDYFSYLYPGAPVDRVFSVSYMLA--CFLPLVLIVLCFPKS 101


>06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624
          Length = 443

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 119 WQCGRVFPENILL*RSCPGHTNSERTLYQSLTK 217
           W C  VF E  +  R CP   ++ER +Y   TK
Sbjct: 182 WTCEEVFVEEAVRDRVCPIPDSAERPVYHITTK 214


>06_03_1446 - 30220158-30220278,30220866-30222229
          Length = 494

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 119 WQCGRVFPENILL*RSCPGHTNSERTLYQSLTK 217
           W C  VF E  +  R CP   + ER +Y   TK
Sbjct: 182 WTCEEVFVEEAVRDRVCPIPDSDERPVYHITTK 214


>06_03_1434 - 30139990-30140110,30140698-30142061
          Length = 494

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 119 WQCGRVFPENILL*RSCPGHTNSERTLYQSLTK 217
           W C  VF E  +  R CP   + ER +Y   TK
Sbjct: 182 WTCEEVFVEEAVRDRVCPIPDSDERPVYHITTK 214


>01_06_1495 + 37769982-37771496
          Length = 504

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 548 DIXGQREDLPPSGYIAR*TDGLNVVVRNLYICALS*KCRNRDSGI 414
           D  G+RE+LPP  Y+    +   ++  + + C +  K   RD+ +
Sbjct: 235 DDGGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANL 279


>04_03_0497 +
           16566601-16566696,16567026-16567102,16567903-16568047,
           16568265-16568309,16568338-16569294,16569603-16569896,
           16571129-16571242,16571826-16571913,16571995-16572050,
           16572250-16572304,16572417-16572460
          Length = 656

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = -3

Query: 442 ENVVTEIQASVNYLALYDGXPXQYVFKSKYLLSL*VYFPLILIIIIMM 299
           E++ T + + V  L   +     Y+  ++++ S+  + PLIL++++MM
Sbjct: 425 EDISTSVHSDVESLGNRNIILPSYIHDAEFIFSM--FLPLILVVLLMM 470


>12_01_0199 -
           1467137-1467172,1467302-1467391,1468304-1468396,
           1468488-1469515,1470005-1470552,1470656-1470695,
           1473774-1475196
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 224 TFKFSLFINIQPPYXSNHRTEVITLHHYY-YYKNERKIYLQT*KVF 358
           +F+FS +  +   Y ++  + +   + YY Y++N RKIY  T + F
Sbjct: 192 SFRFSDYAMLSLVYDNHEMSSIYWPNPYYSYWQNSRKIYNFTREAF 237


>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
          Length = 776

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 224 TFKFSLFINIQPPYXSNHRTEVITLHHYY-YYKNERKIYLQT*KVF 358
           +F+FS +  +   Y ++  + +   + YY Y++N RKIY  T + F
Sbjct: 200 SFRFSDYAMLSLVYDNHEMSSIYWPNPYYSYWQNSRKIYNFTREAF 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,106,118
Number of Sequences: 37544
Number of extensions: 289062
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)