Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1299
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z99281-13|CAB16522.1|  236|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    28   6.1  
L25599-2|AAK84536.1|  419|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF016683-4|AAB66195.1|  410|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
            C16A3.3 protein.
          Length = 1743

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 398  RKIIDRCLNLGYDIFKIKRIY---TSSEQQHSDRRSTEQCNRSVE 523
            RK+++R  NLG+ I K++ +Y      E +H D  + E      E
Sbjct: 1684 RKVLERACNLGFSIHKMRPLYKKWLEMESKHGDAAAVELVKAKAE 1728


>Z99281-13|CAB16522.1|  236|Caenorhabditis elegans Hypothetical
           protein Y57G11C.21 protein.
          Length = 236

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 78  LKSKKLHVKATXAYGSVGVYSQKIYFYRDHVRGIRIQNELFTS 206
           +K+  LH+ +  AY +   Y+ K YF    + G  I+N   T+
Sbjct: 106 VKNFSLHINSQLAYHNFSNYAYKAYFENALMYGKEIKNSTLTA 148


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -2

Query: 491 DGLNVVVRNLYIC 453
           + LNVVVRNLYIC
Sbjct: 134 EALNVVVRNLYIC 146


>L25599-2|AAK84536.1|  419|Caenorhabditis elegans Hypothetical
           protein F54H12.2 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 78  LKSKKLHVKATXAYGSVGVYSQKIYFYRDHVRGIRIQNELFTS 206
           +K+  LH+ +  AY +   Y+ K YF    + G  I+N   T+
Sbjct: 85  VKNFSLHINSQLAYHNSSNYAYKAYFENALMYGKEIKNSTLTA 127


>AF016683-4|AAB66195.1|  410|Caenorhabditis elegans Hypothetical
           protein K09F6.5 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 78  LKSKKLHVKATXAYGSVGVYSQKIYFYRDHVRGIRIQNELFTS 206
           +K+  LH+ +  AY +   Y+ K YF    + G  I+N   T+
Sbjct: 106 VKNFSLHINSRLAYHNSSNYAYKAYFENALMYGKEIKNSTLTA 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,392
Number of Sequences: 27780
Number of extensions: 277141
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)