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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1298
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   182   3e-47
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...   101   1e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   101   1e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    96   5e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    67   2e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    65   7e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    53   3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    42   1e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    32   0.063
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.15 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   2.4  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    27   3.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   3.1  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   4.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  182 bits (444), Expect = 3e-47
 Identities = 87/116 (75%), Positives = 92/116 (79%)
 Frame = +2

Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
           +RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120

Query: 434 QIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAIL 601
           QI+FETFN PA YVAIQAVLSLYAS              +   P   GYALPHAI+
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIM 176



 Score =  124 bits (300), Expect = 9e-30
 Identities = 55/60 (91%), Positives = 59/60 (98%)
 Frame = +3

Query: 78  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score =  101 bits (241), Expect = 1e-22
 Identities = 43/80 (53%), Positives = 55/80 (68%)
 Frame = +2

Query: 269 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 448
           +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148

Query: 449 TFNTPAMYVAIQAVLSLYAS 508
           +FN   +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +3

Query: 96  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 245
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+  +
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +1

Query: 508 RRTTGIVLDSGDGVFHTVPIYEGIRTSPRHSCVWTLAGRDLT 633
           R  TG V+DSGDGV H +P+ EG         +  LAGRD+T
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTM-PLAGRDVT 217


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  101 bits (241), Expect = 1e-22
 Identities = 42/83 (50%), Positives = 63/83 (75%)
 Frame = +2

Query: 257 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 436
           R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE P+NP ANREKM +
Sbjct: 62  RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121

Query: 437 IMFETFNTPAMYVAIQAVLSLYA 505
            MFE +    +YVAIQAVLSLYA
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYA 144



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
 Frame = +3

Query: 84  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQS 254
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VGDEA++
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +1

Query: 514 TTGIVLDSGDGVFHTVPIYEGIRTSPRHSCVWTLAGRDLTR 636
           ++G+V+DSGDGV H VP+YE +  +     +  +AGRD TR
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLVGRL-DVAGRDATR 187


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
 Frame = +2

Query: 257 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 433
           RG+L ++ PIE GI+ NW DME+IW + + ++ L   PEEHP+LLTE PL    N+EK+ 
Sbjct: 66  RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125

Query: 434 QIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAI 598
           +  +ET N PA+  ++Q VL+LYAS              +   P   G+++P AI
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180



 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 30/53 (56%), Positives = 39/53 (73%)
 Frame = +3

Query: 96  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 254
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +VG EAQ+
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 31/81 (38%), Positives = 45/81 (55%)
 Frame = +2

Query: 266 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 445
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MF
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122

Query: 446 ETFNTPAMYVAIQAVLSLYAS 508
           E+   PA Y+A Q   + +AS
Sbjct: 123 ESLRCPATYLAKQETCAAFAS 143



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 81  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 182
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 29/82 (35%), Positives = 47/82 (57%)
 Frame = +2

Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 460
           P E  +++NWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT+++FE +N 
Sbjct: 86  PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144

Query: 461 PAMYVAIQAVLSLYASVVPPVS 526
           P++   I  + S Y +  P  S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 96  LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 191
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 514 TTGIVLDSGDGVFHTVPIYEGIR 582
           ++GIVL+ G+   H +P+  G R
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGER 187


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = +2

Query: 290 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 469
           +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  + PA 
Sbjct: 74  NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133

Query: 470 YVAIQAVLSLYAS 508
           Y+  QAV   +A+
Sbjct: 134 YLTKQAVCVAFAN 146



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +3

Query: 81  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 251
           EE+ +LV+D GS   + G+AG+++P  + PS      + GV   +  ++ YV DE Q
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 448
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171

Query: 449 TFNTPAMYVAIQAVLSLYA 505
               P   +A + ++ LYA
Sbjct: 172 ECQVPGFTIAYEPLMGLYA 190


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 341  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVV 514
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I  ++ NTP +   + A+  L    V
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = -1

Query: 262 TSLLCASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 98
           TS  C +S    PT  S  P+ PT+ P     P    N     S P         PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448

Query: 97  NAATSSS 77
           N  TS+S
Sbjct: 449 NCTTSTS 455


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 141 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 254
           G+  PRA F  ++  P H G+++ M  KD   G+E  S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 294 PCSMGYLRVRIPLCSVPHLLHKSPSVPYRP 205
           P  + Y     PL +VP +L   PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 241 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 125
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 249 VPHLLHKSPSVPYRPSRPDGGAFPRSRET 163
           +  L+ K+PS PY  SRP   A   S  T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 383 LLTEAPLNPKANREKMTQIMFETFN 457
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 397  SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRR 513
            +PQ +    E++ D++R++  +RH RR P +A  +  RR
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARR 1463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,337
Number of Sequences: 5004
Number of extensions: 63477
Number of successful extensions: 219
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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