Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1298
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 193 1e-49
SB_56| Best HMM Match : Actin (HMM E-Value=0) 193 1e-49
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 193 1e-49
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 2e-49
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23
SB_54| Best HMM Match : Actin (HMM E-Value=0) 99 2e-21
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 83 2e-16
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 71 6e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 58 8e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 4e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 40 0.002
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.62
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 31 1.1
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.9
SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18) 29 2.5
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015) 29 2.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 193 bits (470), Expect = 1e-49
Identities = 93/116 (80%), Positives = 96/116 (82%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 434 QIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAIL 601
QIMFETFN+PAMYVAIQAVLSLYAS + P GYALPHAIL
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Score = 125 bits (302), Expect = 3e-29
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 193 bits (470), Expect = 1e-49
Identities = 93/116 (80%), Positives = 96/116 (82%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 434 QIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAIL 601
QIMFETFN+PAMYVAIQAVLSLYAS + P GYALPHAIL
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Score = 126 bits (305), Expect = 1e-29
Identities = 58/60 (96%), Positives = 60/60 (100%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 193 bits (470), Expect = 1e-49
Identities = 93/116 (80%), Positives = 96/116 (82%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 434 QIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAIL 601
QIMFETFN+PAMYVAIQAVLSLYAS + P GYALPHAIL
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 177
Score = 132 bits (320), Expect = 2e-31
Identities = 60/62 (96%), Positives = 62/62 (100%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 251
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 SK 257
SK
Sbjct: 61 SK 62
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 192 bits (468), Expect = 2e-49
Identities = 92/116 (79%), Positives = 96/116 (82%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 434 QIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAIL 601
QIMFETFN+PAMYVAIQAVLSLYAS + P GYALPHAI+
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAII 177
Score = 128 bits (309), Expect = 4e-30
Identities = 59/62 (95%), Positives = 61/62 (98%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 251
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 SK 257
SK
Sbjct: 61 SK 62
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 183 bits (445), Expect = 1e-46
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYAS 146
Score = 128 bits (309), Expect = 4e-30
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 251
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 SK 257
SK
Sbjct: 61 SK 62
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +1
Query: 511 RTTGIVLDSGDGVFHTVPIYE 573
RTTGIV+DSGDGV HTVPIYE
Sbjct: 148 RTTGIVMDSGDGVSHTVPIYE 168
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 126 bits (305), Expect = 1e-29
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/62 (54%), Positives = 39/62 (62%)
Frame = +2
Query: 416 NREKMTQIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHA 595
N + M +IMFETFN+PAMYVAIQAVLSLYAS + P GYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 596 IL 601
I+
Sbjct: 138 II 139
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTF 343
+RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 105 bits (253), Expect = 2e-23
Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Frame = +2
Query: 248 TEQRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 424
++ R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NRE
Sbjct: 62 SQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNRE 121
Query: 425 KMTQIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPH 592
KM ++MFE + +Y+AIQAVL+LYA + + CP G+ALPH
Sbjct: 122 KMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPH 177
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +3
Query: 90 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 248
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 99 bits (238), Expect = 2e-21
Identities = 50/91 (54%), Positives = 62/91 (68%)
Frame = +2
Query: 323 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 502
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 503 ASVVPPVSCWTPATVSSTPCPSTRGYALPHA 595
AS + + S P GY LPHA
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHA 2219
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 197
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = +2
Query: 371 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVS 550
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 551 STPCPSTRGYALPHAILASGL 613
S P G+A+PH+I+ + +
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDI 206
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 71.3 bits (167), Expect = 6e-13
Identities = 35/111 (31%), Positives = 60/111 (54%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 460
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 461 PAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAILASGL 613
PA ++ +VL+ +A+ ++ P GY L AI+ S L
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPL 113
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 197
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/55 (58%), Positives = 35/55 (63%)
Frame = +2
Query: 437 IMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSSTPCPSTRGYALPHAIL 601
IMFE FN+PA+YVAIQAVLSLYAS + S P GYALPHAIL
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAIL 55
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +3
Query: 66 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 236
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 237 GDEAQSK 257
GD A +K
Sbjct: 753 GDAAVAK 759
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 275 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 388
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 508 RRTTGIVLDSGDGVFHTVPI 567
R TG V+DSGDGV H +P+
Sbjct: 353 RTLTGCVIDSGDGVTHVIPV 372
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 508 RRTTGIVLDSGDGVFHTVPIYEGIRTSPRHSCV--WTLAGRDLT 633
R TG V+DSGDGV H +P+ EG SC+ +AGRD+T
Sbjct: 59 RTLTGCVIDSGDGVTHVIPVAEGYVIG---SCIKHIPIAGRDIT 99
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 194 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 78
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 272 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 424
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 169 GNTARGASSPAKPALHIPEPLSTT 98
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 169 GNTARGASSPAKPALHIPEPLSTT 98
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 441 CSKHSTRPPCTSPSKPCSRCTRPSYHRYRAG 533
C H+ R P T+PS PC S Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 169 GNTARGASSPAKPALHIPEPLSTT 98
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 397 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 489
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYNE 352
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 84 EVAALVVDNGSGMCKAGFAGDDAPRAV 164
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18)
Length = 458
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +1
Query: 355 ACRPRGTPRPAY*GSPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRRTTGIVLD 534
ACR R PR P P+ + ++D D +I R P R + V +T G+ +
Sbjct: 205 ACRGRKDPRNKPPQPPPPEPTENDEDAD---SISRKRRGIGEP-RTVIVNKDKTEGLGIS 260
Query: 535 SGDGVFHTVPI 567
G H VPI
Sbjct: 261 ITGGKEHGVPI 271
>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
Length = 1052
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 615 QSPDARMAWGSAYPLVDGHGVEDTVAGVQHDTGGTTDAYSESTAWMATYMAGVLNVS 445
+ PD +G + +D GV D + GG ++ TAWMA Y +LN+S
Sbjct: 638 KDPDGLNLFGGGFLGLDNVGVFDRSKTLP---GGGRLCQADGTAWMALYCIVMLNIS 691
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 169 GNTARGASSPAKPALHIPEPLSTT 98
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 169 GNTARGASSPAKPALHIPEPLSTT 98
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = -2
Query: 312 SQLVTIPCSMGYLRVRIPLCSVPHLLHKS---------PSVPYRPSRPDGGAFP 178
S+ ++IP G+ R L P L H S P+ PY PS+ G +FP
Sbjct: 3759 SKPISIPSRDGHARAATSLPGSPQLSHLSGRFSSDDVSPTPPYSPSQKQGFSFP 3812
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/86 (25%), Positives = 35/86 (40%)
Frame = +2
Query: 350 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVVPPVSC 529
E +APE + E L+P+ T + T TP VA + +VVP +
Sbjct: 2812 ETTMAPET--TVEPETTLSPETTVAPETTVALGTTVTPETTVAPETTEEPETTVVPETTA 2869
Query: 530 WTPATVSSTPCPSTRGYALPHAILAS 607
T++ + ALP + +AS
Sbjct: 2870 VPETTITQETTVAPETTALPESTVAS 2895
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 246 PHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLLRR 76
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,237,487
Number of Sequences: 59808
Number of extensions: 565429
Number of successful extensions: 2083
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2056
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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