Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1297
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.48 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    26   4.5  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 171 RHNFDVI*LRWSACLRFFFCAVIF-LYLWQLPYNE 70
           R NF  + L+ S+ LRF +   ++ LY+W LPY +
Sbjct: 21  RKNFPFLQLKGSSILRFEWSEEMYRLYIWLLPYRK 55


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 542 NLSHDYKQLEHTANQLIELLSTSKNERTS 456
           N  HD+K+L    NQL E +  S+N  TS
Sbjct: 93  NSRHDFKELVLHTNQLYEPVKRSQNFLTS 121


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 551 LDLNLSHDYKQLEHTANQLIELLSTSKNERTSKENVLEQK 432
           L L +S  +  ++   N  IELL T K E+   ++ L+QK
Sbjct: 126 LTLLMSRAFHSIQDEKNINIELLDTPKLEKDLHKSELQQK 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,803
Number of Sequences: 5004
Number of extensions: 40331
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)