BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1297
(694 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97123-1|AAC39595.1| 344|Homo sapiens chemokine receptor protein. 32 2.2
U95626-4|AAB57794.1| 344|Homo sapiens ccr6 protein. 32 2.2
BC099623-1|AAH99623.1| 344|Homo sapiens similar to chemokine (C... 32 2.2
BC096076-1|AAH96076.1| 344|Homo sapiens chemokine (C-C motif) r... 32 2.2
BC096075-1|AAH96075.1| 344|Homo sapiens chemokine (C-C motif) r... 32 2.2
BC071682-1|AAH71682.1| 344|Homo sapiens chemokine (C-C motif) r... 32 2.2
BC025717-1|AAH25717.1| 344|Homo sapiens chemokine (C-C motif) r... 32 2.2
AY337001-1|AAQ76789.1| 344|Homo sapiens chemokine receptor-like... 32 2.2
AJ344142-1|CAC82985.1| 344|Homo sapiens putative MCP-1 chemokin... 32 2.2
AF014958-1|AAB82106.1| 344|Homo sapiens chemokine receptor X pr... 32 2.2
AF015525-1|AAC34602.1| 344|Homo sapiens putative chemokine rece... 31 3.0
AF015524-1|AAC34601.1| 356|Homo sapiens putative chemokine rece... 31 3.0
>U97123-1|AAC39595.1| 344|Homo sapiens chemokine receptor protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>U95626-4|AAB57794.1| 344|Homo sapiens ccr6 protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>BC099623-1|AAH99623.1| 344|Homo sapiens similar to chemokine (C-C
motif) receptor-like 2 protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>BC096076-1|AAH96076.1| 344|Homo sapiens chemokine (C-C motif)
receptor-like 2 protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>BC096075-1|AAH96075.1| 344|Homo sapiens chemokine (C-C motif)
receptor-like 2 protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>BC071682-1|AAH71682.1| 344|Homo sapiens chemokine (C-C motif)
receptor-like 2 protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>BC025717-1|AAH25717.1| 344|Homo sapiens chemokine (C-C motif)
receptor-like 2 protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>AY337001-1|AAQ76789.1| 344|Homo sapiens chemokine receptor-like 2
protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>AJ344142-1|CAC82985.1| 344|Homo sapiens putative MCP-1 chemokine
receptor protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>AF014958-1|AAB82106.1| 344|Homo sapiens chemokine receptor X
protein.
Length = 344
Score = 31.9 bits (69), Expect = 2.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAIMVV 246
>AF015525-1|AAC34602.1| 344|Homo sapiens putative chemokine
receptor protein.
Length = 344
Score = 31.5 bits (68), Expect = 3.0
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 203 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAVMVV 246
>AF015524-1|AAC34601.1| 356|Homo sapiens putative chemokine
receptor protein.
Length = 356
Score = 31.5 bits (68), Expect = 3.0
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 399 KINLAVEVSPLFLFEYIFL*SSFILRS*KQFY*LISCMFQLLII 530
K+N++V V PLF+F ++++ LR +Q Y L +F ++++
Sbjct: 215 KMNISVLVLPLFIFTFLYVQMRKTLRFREQRYSLFKLVFAVMVV 258
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,442,344
Number of Sequences: 237096
Number of extensions: 1220184
Number of successful extensions: 1537
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -