Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1297
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09660.1 68416.m01145 minichromosome maintenance family prote...    29   3.9  
At5g25070.1 68418.m02971 expressed protein                             27   8.9  

>At3g09660.1 68416.m01145 minichromosome maintenance family protein
           / MCM family protein similar to SP|P49717 DNA
           replication licensing factor MCM4 (CDC21 homolog) {Mus
           musculus}; contains Pfam profile PF00493: MCM2/3/5
           family
          Length = 777

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 599 LSLDFNEFK*LQALINLDLNLSHDYKQLEHTANQLIELLSTSKNERTSKENVLEQK*RRH 420
           LSLD  +FK +  + N  +NL  + K +    N  +  +   + E    ENV++   R H
Sbjct: 77  LSLDLQQFKKISDIENFFINLEDNPKGVIPCMNAAVHKVLFDQWETNEFENVMKINVRLH 136

Query: 419 FY 414
            Y
Sbjct: 137 NY 138


>At5g25070.1 68418.m02971 expressed protein
          Length = 736

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = -3

Query: 560 LINLDLNLSHDYKQLEHTANQLIELLSTSKNERTSKENVLEQK*RRHFYCKIYFM 396
           L+N++  LS + ++L+   +   ELL     ER+SK+++++Q     F  KI F+
Sbjct: 515 LVNIEEKLSEEVQKLQEEVSSTRELL----KERSSKKSIIQQN-ITSFMDKIMFI 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,955
Number of Sequences: 28952
Number of extensions: 188137
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)