Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1296
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    28   1.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    25   7.9  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 430 QYYLDGNNVPYLPYSQYMNSKMY 362
           +Y L+ N +PYLP ++  N K+Y
Sbjct: 264 EYPLNANALPYLPQTEEKNDKLY 286


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 624 FKVFXTYVVISFTSNIRYVFDYFFLFCWPFASSLFSAFEFVLN*LANDF 478
           FK +    V+SF S I+   +   +FC      +F  F+F +   A  F
Sbjct: 92  FKQYAQSCVLSFISLIKADNEEVAVFCLKVIMDIFKTFKFCIESTAQPF 140


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 15  LSYFYSYWHQIDSYILQQILLIGTIYFFINFKC 113
           L + Y Y++ +D   L  I L+ T  F +  KC
Sbjct: 4   LEFVYKYFNSLDVKELYDIYLLRTNVFVVEQKC 36


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 418 DGNNVPYLPYSQYMNSKMYILFQV 347
           D +++PY PYSQ+    + + F +
Sbjct: 22  DASDIPYDPYSQFWGKVLVLTFGI 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,172
Number of Sequences: 5004
Number of extensions: 47881
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)