BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1296 (702 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81458-2|CAB03822.1| 386|Caenorhabditis elegans Hypothetical pr... 31 1.1 Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical pr... 29 4.3 Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 27 9.8 >Z81458-2|CAB03822.1| 386|Caenorhabditis elegans Hypothetical protein C03E10.3 protein. Length = 386 Score = 30.7 bits (66), Expect = 1.1 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 196 DIRRKFASNSVLIAKIVNF*MFS*FKDLHLKLIKK 92 +I+RKF + +V + I+NF F F D H+ L KK Sbjct: 73 EIQRKFENVNVTMGFIINFTTFFYFLDAHIGLYKK 107 >Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical protein T05C12.5 protein. Length = 168 Score = 28.7 bits (61), Expect = 4.3 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 263 NLFKLNGSKKIIITCT 310 NL KLNGSKK ++ CT Sbjct: 103 NLVKLNGSKKFLVHCT 118 >Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical protein W02A11.4 protein. Length = 582 Score = 27.5 bits (58), Expect = 9.8 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -1 Query: 609 TYVVISFTSNIRYVFDYFFLFCWPFASSLFSAFEFVLN*LAN 484 T VV F I FD+ +F + F A++ VLN L N Sbjct: 73 TQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDN 114 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,679,404 Number of Sequences: 27780 Number of extensions: 256454 Number of successful extensions: 554 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 554 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1624019012 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -