Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1296
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical
           protein C03E10.3 protein.
          Length = 386

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 196 DIRRKFASNSVLIAKIVNF*MFS*FKDLHLKLIKK 92
           +I+RKF + +V +  I+NF  F  F D H+ L KK
Sbjct: 73  EIQRKFENVNVTMGFIINFTTFFYFLDAHIGLYKK 107


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 263 NLFKLNGSKKIIITCT 310
           NL KLNGSKK ++ CT
Sbjct: 103 NLVKLNGSKKFLVHCT 118


>Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical
           protein W02A11.4 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 609 TYVVISFTSNIRYVFDYFFLFCWPFASSLFSAFEFVLN*LAN 484
           T VV  F   I   FD+  +F   +    F A++ VLN L N
Sbjct: 73  TQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDN 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,404
Number of Sequences: 27780
Number of extensions: 256454
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)