Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1296
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 290 KIIITCTFIW 319
           K+ +TC FIW
Sbjct: 218 KVFVTCIFIW 227


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 290 KIIITCTFIW 319
           K+ +TC FIW
Sbjct: 218 KVFVTCIFIW 227


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 54  NYRFDANMNKSNLICKK 4
           NY+++ N N  N  CKK
Sbjct: 95  NYKYNYNNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 54  NYRFDANMNKSNLICKK 4
           NY+++ N N  N  CKK
Sbjct: 95  NYKYNYNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 54  NYRFDANMNKSNLICKK 4
           NY+++ N N  N  CKK
Sbjct: 95  NYKYNYNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 54  NYRFDANMNKSNLICKK 4
           NY+++ N N  N  CKK
Sbjct: 95  NYKYNYNNNNYNNNCKK 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,341
Number of Sequences: 438
Number of extensions: 3131
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)