Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1294
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529...    31   0.65 

>07_03_1525 +
           27448257-27448582,27450741-27450973,27451280-27452919,
           27453129-27453575
          Length = 881

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -1

Query: 538 KLLRDARRPILCCLVLYYIVFVLSDYNPKRPSVRPALSLPYIYS*INKHHYF 383
           +LLR ARRP  C L++  I  +LS  N   P+    ++L  +   + KH+YF
Sbjct: 177 QLLRAARRPTKCRLIMIAIAIILSFGNLHIPAALMRVNLAGMR--LAKHNYF 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,852,178
Number of Sequences: 37544
Number of extensions: 254853
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)