Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1294
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53886| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-08)                 28   6.2  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 28   8.1  

>SB_53886| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-08)
          Length = 332

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 214 NIIIIKKKRLVRSKINLNLGQINSQKKR 297
           NI+II+  RLVRS+ NLNL +    ++R
Sbjct: 192 NIVIIR--RLVRSQANLNLPEAQQMRRR 217


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 61  RPLDPHPPSGRARPRPDATD 2
           RPLDP+PP  R R  P   D
Sbjct: 216 RPLDPYPPRERYRDEPPPRD 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,143
Number of Sequences: 59808
Number of extensions: 291414
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)