Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1294
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   8.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 100 YIKIKHFCTLRYI 138
           Y+K+KH  TL YI
Sbjct: 446 YVKVKHSATLGYI 458


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 12  SGRGRARPEGGCGSRG 59
           +GRG+ R  G  GSRG
Sbjct: 78  TGRGKGRGHGKGGSRG 93


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 326 FSIFFLKISYLFFCELIWPKLRLIFDR 246
           F   +  +  LF C  IW    + FDR
Sbjct: 124 FCQIYAMLGSLFGCGSIWTMTMIAFDR 150


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 326 FSIFFLKISYLFFCELIWPKLRLIFDR 246
           F   +  +  LF C  IW    + FDR
Sbjct: 90  FCQIYAMLGSLFGCGSIWTMTMIAFDR 116


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 553 RMRVGLXASLLPANDSARLFSS 618
           +++VGL A ++PA  +A+L  +
Sbjct: 10  KIKVGLQAHVIPAELTAKLLGN 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,380
Number of Sequences: 438
Number of extensions: 2920
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)