Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1292
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   5.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   7.1  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   7.1  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   7.1  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   7.1  

>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 411 RSFLPRTIR--LWNELPSTVFPERYDKSFFKPGLRRVLNGRQKASK 280
           +S +P  +R  +W     ++FP    K F+   +  V+N R + S+
Sbjct: 214 QSGIPNNLRADIWETCSGSLFPRWKSKGFYAKNIDSVINNRCEYSE 259


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +3

Query: 486 DGKNEMIVHLEQFLMNVNDAFFLLLRWVDELTVHLVLSGLLKPI 617
           D KNE +++    L+ V+ +   L++W+ +  + +   G+LKP+
Sbjct: 366 DSKNENLINATS-LLGVDPSS--LVKWLTKRKIKMASEGILKPL 406


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 463 TSSILSRATTVIYSAFPEVFFATYH 389
           T +ILS + +VI  A  +VF+AT H
Sbjct: 608 TVNILSSSISVIECAVNDVFYATVH 632


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 496 FLPSQRPPPE*TSSILSRATTVIYSAF 416
           +LP+  P PE  SS  S   T++Y  F
Sbjct: 236 YLPAYPPNPEGMSSTSSSCKTIVYQFF 262


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 87  TSERPRLRLAVNKINNKYTKTTSAAVT 7
           +SERPRL L     +N  T+ T +A T
Sbjct: 238 SSERPRLNLKPRSSSNVNTEATPSATT 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,115
Number of Sequences: 5004
Number of extensions: 60897
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)