Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1292
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956...    29   4.2  
01_06_1100 + 34530132-34530485,34530544-34530705                       29   4.2  
10_08_0604 + 19152363-19152731,19152773-19153514,19153926-191540...    28   5.5  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    28   5.5  
08_02_0369 - 16324765-16326248,16326339-16326351                       28   5.5  
02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024...    28   7.3  
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88...    27   9.7  

>02_02_0379 +
           9565001-9565515,9565553-9565833,9565884-9566084,
           9566253-9566309,9566955-9567019,9567199-9567420
          Length = 446

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 367 GELIPKPDGTWQKRPLETH 423
           GEL+P PD +W+ RPL+ H
Sbjct: 378 GELLPMPDPSWE-RPLKPH 395


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 483 SARHRSRLHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 355
           SA+H    H   L+ L+  T + +   +   + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147


>10_08_0604 +
           19152363-19152731,19152773-19153514,19153926-19154005,
           19154155-19154487
          Length = 507

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 465 YSGGGR-CDGKNEMIVHLEQFLMNVNDAF-FLLLRWVDEL 578
           +S G R C G    I+HLE FL N+  AF +  + W +E+
Sbjct: 437 FSAGRRTCPGMGYAILHLEYFLANLVTAFEWRRVPWEEEV 476


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -3

Query: 479 PATGVDFIHTI*SHYGHLQCVSRGLFCHVPSGFGMSSPPRCFPS-AMTSPSSNQAC 315
           P   V ++        H   VS G     P     S+PP  FPS A +   S QAC
Sbjct: 677 PGADVKYVAVDDQILNHTDYVSSGCEVLNPENHPSSTPPSTFPSYASSDQQSQQAC 732


>08_02_0369 - 16324765-16326248,16326339-16326351
          Length = 498

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 275 SHLEAFCLPLSTLRKPGLKKDLS*RSGNTVEGSSFQSRMVRGKKDLWKRTVDD 433
           SH+ A+C+ +S L    +  +L  R G  V G      + +   DL K TV D
Sbjct: 377 SHVTAYCVFMSQLASTPMDVELLSRRGVIVHGLGNNGEVAKRFADLCKGTVFD 429


>02_05_1196 -
           34901320-34901342,34901937-34902041,34902314-34902482,
           34902645-34902716,34902788-34902871,34903219-34903317,
           34903416-34903515,34903704-34903878,34903985-34904198,
           34904727-34904803,34904879-34905048,34905593-34905629,
           34905988-34906123,34906658-34906915
          Length = 572

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 268 RDLSLGSLLPTVK-YSPQAWFEEGLVIALGKHRGGELIPKPDGTWQKRPLE 417
           R++S G+L  T+K + PQ+    GL+  L K+  G+ +  P   W++ P++
Sbjct: 329 REVSDGTLFKTIKDWDPQSI---GLIHQLEKYYQGDPVLNPLTPWERPPIK 376


>03_01_0111 +
           884501-884970,885069-885147,885530-885574,885838-885903,
           886362-886420,886626-886701,886825-886956,887046-887153,
           887679-887733,887822-888042
          Length = 436

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -3

Query: 365 PRCFPSAMTSPSSNQACGEYLTVGRRLPSERSL 267
           P   PSA+ SPS +QA G  L  G    S RSL
Sbjct: 46  PPPLPSALRSPSRSQALGLPLPFGLLHASRRSL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,913,755
Number of Sequences: 37544
Number of extensions: 445042
Number of successful extensions: 1102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)