BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1292 (646 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956... 29 4.2 01_06_1100 + 34530132-34530485,34530544-34530705 29 4.2 10_08_0604 + 19152363-19152731,19152773-19153514,19153926-191540... 28 5.5 08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 28 5.5 08_02_0369 - 16324765-16326248,16326339-16326351 28 5.5 02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024... 28 7.3 03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 27 9.7 >02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084, 9566253-9566309,9566955-9567019,9567199-9567420 Length = 446 Score = 28.7 bits (61), Expect = 4.2 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 367 GELIPKPDGTWQKRPLETH 423 GEL+P PD +W+ RPL+ H Sbjct: 378 GELLPMPDPSWE-RPLKPH 395 >01_06_1100 + 34530132-34530485,34530544-34530705 Length = 171 Score = 28.7 bits (61), Expect = 4.2 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 483 SARHRSRLHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 355 SA+H H L+ L+ T + + + + L+NEL ST+F Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147 >10_08_0604 + 19152363-19152731,19152773-19153514,19153926-19154005, 19154155-19154487 Length = 507 Score = 28.3 bits (60), Expect = 5.5 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +3 Query: 465 YSGGGR-CDGKNEMIVHLEQFLMNVNDAF-FLLLRWVDEL 578 +S G R C G I+HLE FL N+ AF + + W +E+ Sbjct: 437 FSAGRRTCPGMGYAILHLEYFLANLVTAFEWRRVPWEEEV 476 >08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733, 24258994-24260065,24260241-24260563,24260647-24260835, 24261400-24261506,24262103-24262163,24262617-24262634 Length = 1258 Score = 28.3 bits (60), Expect = 5.5 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Frame = -3 Query: 479 PATGVDFIHTI*SHYGHLQCVSRGLFCHVPSGFGMSSPPRCFPS-AMTSPSSNQAC 315 P V ++ H VS G P S+PP FPS A + S QAC Sbjct: 677 PGADVKYVAVDDQILNHTDYVSSGCEVLNPENHPSSTPPSTFPSYASSDQQSQQAC 732 >08_02_0369 - 16324765-16326248,16326339-16326351 Length = 498 Score = 28.3 bits (60), Expect = 5.5 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +2 Query: 275 SHLEAFCLPLSTLRKPGLKKDLS*RSGNTVEGSSFQSRMVRGKKDLWKRTVDD 433 SH+ A+C+ +S L + +L R G V G + + DL K TV D Sbjct: 377 SHVTAYCVFMSQLASTPMDVELLSRRGVIVHGLGNNGEVAKRFADLCKGTVFD 429 >02_05_1196 - 34901320-34901342,34901937-34902041,34902314-34902482, 34902645-34902716,34902788-34902871,34903219-34903317, 34903416-34903515,34903704-34903878,34903985-34904198, 34904727-34904803,34904879-34905048,34905593-34905629, 34905988-34906123,34906658-34906915 Length = 572 Score = 27.9 bits (59), Expect = 7.3 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +1 Query: 268 RDLSLGSLLPTVK-YSPQAWFEEGLVIALGKHRGGELIPKPDGTWQKRPLE 417 R++S G+L T+K + PQ+ GL+ L K+ G+ + P W++ P++ Sbjct: 329 REVSDGTLFKTIKDWDPQSI---GLIHQLEKYYQGDPVLNPLTPWERPPIK 376 >03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-885903, 886362-886420,886626-886701,886825-886956,887046-887153, 887679-887733,887822-888042 Length = 436 Score = 27.5 bits (58), Expect = 9.7 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -3 Query: 365 PRCFPSAMTSPSSNQACGEYLTVGRRLPSERSL 267 P PSA+ SPS +QA G L G S RSL Sbjct: 46 PPPLPSALRSPSRSQALGLPLPFGLLHASRRSL 78 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,913,755 Number of Sequences: 37544 Number of extensions: 445042 Number of successful extensions: 1102 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1102 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1596695220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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