Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1292
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70270-4|CAA94225.1|  615|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z70270-4|CAA94225.1|  615|Caenorhabditis elegans Hypothetical
           protein C53D6.6 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = +2

Query: 218 GTKPSYLDKSTRNYEFKEISH--LEAFCL---PLSTLRKPGLKKDLS 343
           GT+  +++ +  ++E K I+   +   CL   PLSTL +PG++  L+
Sbjct: 89  GTEGDFINWTAEDFEEKRINDALINMICLDAMPLSTLERPGIQHFLN 135


>AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical
           protein C41D11.3 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 425 QCVSRGLFCHVPSGFGMSSPPRCFPSAMTSP 333
           QC   G+ C V  G   + P  CF    T+P
Sbjct: 313 QCAIDGIHCQVDGGEWPTQPCACFAETCTNP 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,106,642
Number of Sequences: 27780
Number of extensions: 350295
Number of successful extensions: 854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)