Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1292
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28900.1 68418.m03562 calcium-binding EF hand family protein ...    29   3.5  
At5g28850.2 68418.m03550 calcium-binding EF hand family protein ...    29   3.5  
At1g02290.1 68414.m00171 expressed protein                             28   6.1  
At5g13770.1 68418.m01606 pentatricopeptide (PPR) repeat-containi...    27   8.1  

>At5g28900.1 68418.m03562 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 536

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 389 SGFGMSSPPRCFPSAMTSPSSNQACGEYLTVGRRLPS 279
           SG   ++ P  FP+    P S ++CG   T  +R PS
Sbjct: 72  SGSNSATIPSMFPAGSAPPLSPRSCGSPRTTKQRAPS 108


>At5g28850.2 68418.m03550 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 536

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 389 SGFGMSSPPRCFPSAMTSPSSNQACGEYLTVGRRLPS 279
           SG   ++ P  FP+    P S ++CG   T  +R PS
Sbjct: 72  SGSNSATIPSMFPAGSAPPLSPRSCGSPRTTKQRAPS 108


>At1g02290.1 68414.m00171 expressed protein
          Length = 443

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 215 PGTKPSYLDKSTRNYEFKEISHLEAFCLPLSTLRKP 322
           PG KP  +D+ +   E K IS    F      LRKP
Sbjct: 376 PGFKPRTVDRGSETTESKRISSSNNFQREAKALRKP 411


>At5g13770.1 68418.m01606 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 609

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 53  LTASRSLGL-SEVRWLQESMD 112
           L A R  GL S++RWLQES D
Sbjct: 570 LNALRDAGLNSQIRWLQESFD 590


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,661
Number of Sequences: 28952
Number of extensions: 336389
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)