Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1291
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 132 6e-32
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 87 2e-18
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 86 5e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 68 1e-12
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 29 0.82
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.3
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.4
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 4.4
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 5.8
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 7.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 132 bits (318), Expect = 6e-32
Identities = 57/71 (80%), Positives = 65/71 (91%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+EA
Sbjct: 65 LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREA 124
Query: 434 ESCDCLQGFQL 466
E+CD LQGFQL
Sbjct: 125 EACDALQGFQL 135
Score = 113 bits (273), Expect = 2e-26
Identities = 47/64 (73%), Positives = 55/64 (85%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 243 PRAI 254
PRA+
Sbjct: 61 PRAV 64
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAHFQFIN*LKTQTKPTCID 669
G LL+SKIREEYPDR+M T+SV P+PK SDTVVEPYNA ++ + CID
Sbjct: 148 GTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCID 203
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 87.0 bits (206), Expect = 2e-18
Identities = 37/73 (50%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Frame = +2
Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 421
PR + VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +
Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126
Query: 422 RKEAESCDCLQGF 460
R+ A++C LQGF
Sbjct: 127 RRMADNCSGLQGF 139
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 224
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 225 SGGKYVPRAI 254
GK+VPR+I
Sbjct: 61 GQGKFVPRSI 70
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ EY + +SV P+P+VS +VVEPYN+
Sbjct: 154 GALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNS 191
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 85.8 bits (203), Expect = 5e-18
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +2
Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 421
PR + VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D +
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKI 122
Query: 422 RKEAESCDCLQGF 460
R+ A++C LQGF
Sbjct: 123 RRIADNCSGLQGF 135
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 236
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 237 YVPRAI 254
YVPR+I
Sbjct: 61 YVPRSI 66
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +1
Query: 499 YGHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
+G LL+ ++ EY + +SV P+P+VS +VVEPYN+
Sbjct: 149 FGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNS 187
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.1 bits (159), Expect = 1e-12
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +3
Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 246 RAI 254
RAI
Sbjct: 63 RAI 65
Score = 64.5 bits (150), Expect = 1e-11
Identities = 26/73 (35%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRK 427
L+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D++ +
Sbjct: 66 LIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDR 124
Query: 428 EAESCDCLQGFQL 466
EA+ D L+GF L
Sbjct: 125 EADGSDSLEGFSL 137
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNA 615
G L+ ++ + YP +I+ TYSV P S VSD VV+PYN+
Sbjct: 150 GSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNS 188
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 28.7 bits (61), Expect = 0.82
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 493 FRYGHLLISKIREEYP-DRIMNTYSVVP--SPKVSDTVVE 603
++Y H++ SK++ EYP D+++ SV+ PK VVE
Sbjct: 391 YQYAHVVASKLQREYPRDKVLYYSSVLTEFDPKGIQEVVE 430
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 102 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 203
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 296 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 397
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 365 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 454
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 230 RQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 358
R+V AP+H GT RS +FR ++ FGQ GN
Sbjct: 486 REVFAPKH-ARRRLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 438 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 301
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 317 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 448
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 354 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 259
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,101
Number of Sequences: 5004
Number of extensions: 49837
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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