SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1291
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide...   151   3e-37
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden...   151   3e-37
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t...   151   3e-37
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden...   151   4e-37
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden...   150   1e-36
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden...   149   2e-36
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near...   148   3e-36
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near...   148   3e-36
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden...   147   5e-36
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne...    82   4e-16
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne...    82   4e-16
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide...    81   7e-16
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide...    81   7e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id...    81   7e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne...    81   7e-16
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide...    79   3e-15
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin...    59   2e-09
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin...    59   2e-09
At4g37190.1 68417.m05265 expressed protein                             32   0.30 
At2g31580.1 68415.m03858 expressed protein   contains Pfam profi...    31   0.93 
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si...    30   1.6  
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ...    29   3.7  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    29   3.7  
At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family prote...    28   6.5  
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot...    28   6.5  
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati...    27   8.6  

>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
           identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
           thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
          Length = 449

 Score =  151 bits (367), Expect = 3e-37
 Identities = 66/71 (92%), Positives = 71/71 (100%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65  LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135



 Score =  116 bits (279), Expect = 1e-26
 Identities = 49/70 (70%), Positives = 58/70 (82%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREI+HIQ GQCGNQIGAKFWE++  EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 243 PRAISSTWSP 272
           PRA+     P
Sbjct: 61  PRAVLMDLEP 70



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185


>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
           identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
           thaliana}
          Length = 444

 Score =  151 bits (367), Expect = 3e-37
 Identities = 66/71 (92%), Positives = 71/71 (100%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65  LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135



 Score =  119 bits (286), Expect = 2e-27
 Identities = 53/70 (75%), Positives = 58/70 (82%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREI+HIQ GQCGNQIGAKFWE+I  EHGID TG   GD+DLQLERINVY+NEASGGKYV
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60

Query: 243 PRAISSTWSP 272
           PRA+     P
Sbjct: 61  PRAVLMDLEP 70



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185


>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
           GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
           thaliana}
          Length = 449

 Score =  151 bits (367), Expect = 3e-37
 Identities = 66/71 (92%), Positives = 71/71 (100%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65  LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135



 Score =  116 bits (280), Expect = 1e-26
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60

Query: 243 PRAISSTWSP 272
           PRA+     P
Sbjct: 61  PRAVLMDLEP 70



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185


>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
           identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
           thaliana}
          Length = 449

 Score =  151 bits (366), Expect = 4e-37
 Identities = 65/71 (91%), Positives = 71/71 (100%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEA
Sbjct: 66  LMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 126 ENCDCLQGFQV 136



 Score =  121 bits (291), Expect = 5e-28
 Identities = 54/71 (76%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 239
           MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60

Query: 240 VPRAISSTWSP 272
           VPRA+     P
Sbjct: 61  VPRAVLMDLEP 71



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 186


>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
           identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
           thaliana}
          Length = 447

 Score =  150 bits (363), Expect = 1e-36
 Identities = 64/71 (90%), Positives = 71/71 (100%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEA
Sbjct: 66  LMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 126 ENCDCLQGFQV 136



 Score =  125 bits (302), Expect = 2e-29
 Identities = 54/71 (76%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 239
           MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 240 VPRAISSTWSP 272
           VPRA+     P
Sbjct: 61  VPRAVLMDLEP 71



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 186


>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
           identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
           thaliana}
          Length = 449

 Score =  149 bits (361), Expect = 2e-36
 Identities = 64/71 (90%), Positives = 71/71 (100%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEA
Sbjct: 65  LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 124

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135



 Score =  123 bits (296), Expect = 1e-28
 Identities = 53/70 (75%), Positives = 60/70 (85%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 243 PRAISSTWSP 272
           PRAI     P
Sbjct: 61  PRAILMDLEP 70



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185


>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score =  148 bits (359), Expect = 3e-36
 Identities = 64/71 (90%), Positives = 70/71 (98%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65  LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135



 Score =  122 bits (293), Expect = 3e-28
 Identities = 53/70 (75%), Positives = 59/70 (84%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREI+HIQ GQCGNQIGAKFWE++  EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 243 PRAISSTWSP 272
           PRA+     P
Sbjct: 61  PRAVLMDLEP 70



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185


>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score =  148 bits (359), Expect = 3e-36
 Identities = 64/71 (90%), Positives = 70/71 (98%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65  LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124

Query: 434 ESCDCLQGFQL 466
           E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135



 Score =  122 bits (293), Expect = 3e-28
 Identities = 53/70 (75%), Positives = 59/70 (84%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREI+HIQ GQCGNQIGAKFWE++  EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 243 PRAISSTWSP 272
           PRA+     P
Sbjct: 61  PRAVLMDLEP 70



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185


>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
           identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
           thaliana}
          Length = 444

 Score =  147 bits (357), Expect = 5e-36
 Identities = 65/71 (91%), Positives = 70/71 (98%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
           L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65  LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124

Query: 434 ESCDCLQGFQL 466
           E+ DCLQGFQ+
Sbjct: 125 ENSDCLQGFQV 135



 Score =  121 bits (292), Expect = 4e-28
 Identities = 54/70 (77%), Positives = 59/70 (84%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60

Query: 243 PRAISSTWSP 272
           PRA+     P
Sbjct: 61  PRAVLMDLEP 70



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185


>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 36/68 (52%), Positives = 48/68 (70%)
 Frame = +2

Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
           VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK A+
Sbjct: 68  VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127

Query: 437 SCDCLQGF 460
           +C  LQGF
Sbjct: 128 NCTGLQGF 135



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
           MREI+ I  GQ G Q+G   WE+   EHGI P G    D+ + +  +  N +++E   GK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 237 YVPRAI 254
           +VPRA+
Sbjct: 61  HVPRAV 66



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LL+ ++  +Y  +    +++ PSP+VS  VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNS 187


>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 36/68 (52%), Positives = 48/68 (70%)
 Frame = +2

Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
           VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK A+
Sbjct: 68  VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127

Query: 437 SCDCLQGF 460
           +C  LQGF
Sbjct: 128 NCTGLQGF 135



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
           MREI+ I  GQ G Q+G   WE+   EHGI P G    D+ + +  +  N +++E   GK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 237 YVPRAI 254
           +VPRA+
Sbjct: 61  HVPRAV 66



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LL+ ++  +Y  +    +++ PSP+VS  VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNS 187


>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
           identical to SP|P29511 Tubulin alpha-6 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 35/68 (51%), Positives = 48/68 (70%)
 Frame = +2

Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
           VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+
Sbjct: 68  VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127

Query: 437 SCDCLQGF 460
           +C  LQGF
Sbjct: 128 NCTGLQGF 135



 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
           MRE + I  GQ G Q+G   WE+   EHGI P G   GD  +    +  N +++E   GK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60

Query: 237 YVPRAI 254
           +VPRA+
Sbjct: 61  HVPRAV 66



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LL+ ++  +Y  +    ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187


>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
           identical to SP|P29511 Tubulin alpha-6 chain
           {Arabidopsis thaliana}
          Length = 427

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 35/68 (51%), Positives = 48/68 (70%)
 Frame = +2

Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
           VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+
Sbjct: 68  VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127

Query: 437 SCDCLQGF 460
           +C  LQGF
Sbjct: 128 NCTGLQGF 135



 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
           MRE + I  GQ G Q+G   WE+   EHGI P G   GD  +    +  N +++E   GK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60

Query: 237 YVPRAI 254
           +VPRA+
Sbjct: 61  HVPRAV 66



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LL+ ++  +Y  +    ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187


>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
           identical to tubulin alpha-2/alpha-4 chain SP|P29510
           GB:P29510 from [Arabidopsis thaliana]
          Length = 450

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 35/68 (51%), Positives = 48/68 (70%)
 Frame = +2

Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
           VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+
Sbjct: 68  VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127

Query: 437 SCDCLQGF 460
           +C  LQGF
Sbjct: 128 NCTGLQGF 135



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
           MRE + I  GQ G Q+G   WE+   EHGI P G    D  +    +  N +++E   GK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 237 YVPRAI 254
           +VPRA+
Sbjct: 61  HVPRAV 66



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LL+ ++  +Y  +    ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187


>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
           nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
           chain from [Arabidopsis thaliana]
          Length = 450

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 35/68 (51%), Positives = 48/68 (70%)
 Frame = +2

Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
           VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+
Sbjct: 68  VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127

Query: 437 SCDCLQGF 460
           +C  LQGF
Sbjct: 128 NCTGLQGF 135



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
           MRE + I  GQ G Q+G   WE+   EHGI P G    D  +    +  N +++E   GK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 237 YVPRAI 254
           +VPRA+
Sbjct: 61  HVPRAV 66



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LL+ ++  +Y  +    ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187


>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
           identical to SP|P11139 Tubulin alpha-1 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 33/68 (48%), Positives = 49/68 (72%)
 Frame = +2

Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
           +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD+ L+ +RK A+
Sbjct: 68  LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLAD 127

Query: 437 SCDCLQGF 460
           +C  LQGF
Sbjct: 128 NCTGLQGF 135



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
           MREI+ I  GQ G Q+G   WE+   EHGI P G    DS +    +  N +++E S G+
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60

Query: 237 YVPRAI 254
           +VPRA+
Sbjct: 61  HVPRAV 66



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
           G LL+ ++  ++  +    +++ PSP+VS  VVEPYN+
Sbjct: 150 GSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNS 187


>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
           (TUBG2) identical to  SP|P38558 Tubulin gamma-2 chain
           (Gamma-2 tubulin) {Arabidopsis thaliana}
          Length = 474

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/63 (41%), Positives = 39/63 (61%)
 Frame = +3

Query: 66  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
           REI+ +Q GQCGNQIG +FW+ +  EHGI   G     +    +R +V++ +A    Y+P
Sbjct: 3   REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62

Query: 246 RAI 254
           RA+
Sbjct: 63  RAL 65



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRK 427
           L+DLEP  ++ +++G +  ++  +N        GAGNNWA G Y +G  + + ++D++ +
Sbjct: 66  LIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDR 124

Query: 428 EAESCDCLQGFQL 466
           EA+  D L+GF L
Sbjct: 125 EADGSDSLEGFVL 137



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNA 615
           G  L+  + + Y  +++ TYSV P+  + SD VV+PYN+
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNS 188


>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
           (TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
           (Gamma-1 tubulin) {Arabidopsis thaliana}
          Length = 474

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/63 (41%), Positives = 39/63 (61%)
 Frame = +3

Query: 66  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
           REI+ +Q GQCGNQIG +FW+ +  EHGI   G     +    +R +V++ +A    Y+P
Sbjct: 3   REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62

Query: 246 RAI 254
           RA+
Sbjct: 63  RAL 65



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRK 427
           L+DLEP  ++ +++G +  ++  +N        GAGNNWA G Y +G  + + ++D++ +
Sbjct: 66  LIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDR 124

Query: 428 EAESCDCLQGFQL 466
           EA+  D L+GF L
Sbjct: 125 EADGSDSLEGFVL 137



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 502 GHLLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNA 615
           G  L+  + + Y  +++ TYSV P+  + SD VV+PYN+
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNS 188


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 230
           MREIV IQ G+  N +G+ FW    +  G+  DP +     + +L ++ +        G 
Sbjct: 1   MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60

Query: 231 GKYVPRAISSTWSPAPWTLSA 293
             Y PR +S     A  T+S+
Sbjct: 61  ATYTPRLVSVNLKGALGTMSS 81


>At2g31580.1 68415.m03858 expressed protein   contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 567

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +2

Query: 395 LVDSVLDVVRKEAESCDCLQGF 460
           +++SV  VVRKEAE+C+CLQ F
Sbjct: 1   MINSV-GVVRKEAENCNCLQVF 21


>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 399

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
 Frame = -3

Query: 266 PSRRDGAGHVLAAGGFI--VVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAAL 93
           P R+    H++ +  F+  ++    L  Q  V  +GT GV+   + D+LP  S D VA L
Sbjct: 6   PLRKSPTSHMVFSSFFLSFLLVFSILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATL 63

Query: 92  ------TSLDMYDFPHFVL 54
                  +  +YD  H VL
Sbjct: 64  LKSAKIRNTRIYDADHSVL 82


>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 304

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 470 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 357
           VS G+PG  HT   P    ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
            family protein low similarity to RNA polymerase IIA
            largest subunit [Trypanosoma brucei] GI:162215; contains
            InterPro accession IPR000722: RNA polymerase, alpha
            subunit
          Length = 1453

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 463  TDTLARRRHRFRYGHLLISKIREEYP-DRIMNTYSVVPSPKVSDTV-VEPYNAHF 621
            ++ L++++H F YG L I    E+     I++T  ++ SP  +  V + P+  HF
Sbjct: 930  SEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHF 984


>At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 317

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 493 FRYGHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVE 603
           F YG ++  KI E YPD +         P ++DT+ E
Sbjct: 134 FSYGGMVAFKIAEAYPDMVRAIVVSGSIPTMTDTINE 170


>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -3

Query: 233 AAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 54
           AAGGF  + I + + ++ VP     G   VL+GD       DL A L +     FP  +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194


>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
           similar to (1-4)-beta-mannan endohydrolase [Coffea
           arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
           GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
           profile PF00150: Cellulase (glycosyl hydrolase family 5)
          Length = 408

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 69  EIVHIQAGQCGNQIGAKFWEIISD 140
           +I++  A + G+  GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,566
Number of Sequences: 28952
Number of extensions: 286147
Number of successful extensions: 872
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -