Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1291
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 151 3e-37
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 151 3e-37
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 151 3e-37
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 151 4e-37
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 150 1e-36
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 149 2e-36
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 148 3e-36
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 148 3e-36
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 147 5e-36
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 82 4e-16
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 82 4e-16
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 81 7e-16
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 81 7e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 81 7e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 81 7e-16
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 79 3e-15
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 59 2e-09
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 59 2e-09
At4g37190.1 68417.m05265 expressed protein 32 0.30
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 31 0.93
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 30 1.6
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 3.7
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun... 29 3.7
At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family prote... 28 6.5
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 6.5
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 8.6
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 151 bits (367), Expect = 3e-37
Identities = 66/71 (92%), Positives = 71/71 (100%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135
Score = 116 bits (279), Expect = 1e-26
Identities = 49/70 (70%), Positives = 58/70 (82%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 151 bits (367), Expect = 3e-37
Identities = 66/71 (92%), Positives = 71/71 (100%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135
Score = 119 bits (286), Expect = 2e-27
Identities = 53/70 (75%), Positives = 58/70 (82%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 71.3 bits (167), Expect = 5e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 151 bits (367), Expect = 3e-37
Identities = 66/71 (92%), Positives = 71/71 (100%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135
Score = 116 bits (280), Expect = 1e-26
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 71.3 bits (167), Expect = 5e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 151 bits (366), Expect = 4e-37
Identities = 65/71 (91%), Positives = 71/71 (100%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEA
Sbjct: 66 LMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 126 ENCDCLQGFQV 136
Score = 121 bits (291), Expect = 5e-28
Identities = 54/71 (76%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 239
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 240 VPRAISSTWSP 272
VPRA+ P
Sbjct: 61 VPRAVLMDLEP 71
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 186
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 150 bits (363), Expect = 1e-36
Identities = 64/71 (90%), Positives = 71/71 (100%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEA
Sbjct: 66 LMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 126 ENCDCLQGFQV 136
Score = 125 bits (302), Expect = 2e-29
Identities = 54/71 (76%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 239
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 240 VPRAISSTWSP 272
VPRA+ P
Sbjct: 61 VPRAVLMDLEP 71
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 186
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 149 bits (361), Expect = 2e-36
Identities = 64/71 (90%), Positives = 71/71 (100%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEA
Sbjct: 65 LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 124
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135
Score = 123 bits (296), Expect = 1e-28
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 243 PRAISSTWSP 272
PRAI P
Sbjct: 61 PRAILMDLEP 70
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 148 bits (359), Expect = 3e-36
Identities = 64/71 (90%), Positives = 70/71 (98%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135
Score = 122 bits (293), Expect = 3e-28
Identities = 53/70 (75%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 148 bits (359), Expect = 3e-36
Identities = 64/71 (90%), Positives = 70/71 (98%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDCLQGFQL 466
E+CDCLQGFQ+
Sbjct: 125 ENCDCLQGFQV 135
Score = 122 bits (293), Expect = 3e-28
Identities = 53/70 (75%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNA 185
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 147 bits (357), Expect = 5e-36
Identities = 65/71 (91%), Positives = 70/71 (98%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 433
L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEA
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDCLQGFQL 466
E+ DCLQGFQ+
Sbjct: 125 ENSDCLQGFQV 135
Score = 121 bits (292), Expect = 4e-28
Identities = 54/70 (77%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 71.3 bits (167), Expect = 5e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNA 185
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD VRK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Query: 437 SCDCLQGF 460
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ +Y + +++ PSP+VS VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNS 187
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD VRK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Query: 437 SCDCLQGF 460
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ +Y + +++ PSP+VS VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNS 187
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 81.0 bits (191), Expect = 7e-16
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 437 SCDCLQGF 460
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ +Y + ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 81.0 bits (191), Expect = 7e-16
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 437 SCDCLQGF 460
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ +Y + ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 81.0 bits (191), Expect = 7e-16
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 437 SCDCLQGF 460
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ +Y + ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 81.0 bits (191), Expect = 7e-16
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A+
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 437 SCDCLQGF 460
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ +Y + ++V PSP+VS +VVEPYN+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 79.0 bits (186), Expect = 3e-15
Identities = 33/68 (48%), Positives = 49/68 (72%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 436
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+ +RK A+
Sbjct: 68 LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLAD 127
Query: 437 SCDCLQGF 460
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 60.9 bits (141), Expect = 8e-10
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 615
G LL+ ++ ++ + +++ PSP+VS VVEPYN+
Sbjct: 150 GSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNS 187
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +3
Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 246 RAI 254
RA+
Sbjct: 63 RAL 65
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRK 427
L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D++ +
Sbjct: 66 LIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDR 124
Query: 428 EAESCDCLQGFQL 466
EA+ D L+GF L
Sbjct: 125 EADGSDSLEGFVL 137
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNA 615
G L+ + + Y +++ TYSV P+ + SD VV+PYN+
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNS 188
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +3
Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 246 RAI 254
RA+
Sbjct: 63 RAL 65
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRK 427
L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D++ +
Sbjct: 66 LIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDR 124
Query: 428 EAESCDCLQGFQL 466
EA+ D L+GF L
Sbjct: 125 EADGSDSLEGFVL 137
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 502 GHLLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNA 615
G L+ + + Y +++ TYSV P+ + SD VV+PYN+
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNS 188
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 32.3 bits (70), Expect = 0.30
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 230
MREIV IQ G+ N +G+ FW + G+ DP + + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 231 GKYVPRAISSTWSPAPWTLSA 293
Y PR +S A T+S+
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 395 LVDSVLDVVRKEAESCDCLQGF 460
+++SV VVRKEAE+C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = -3
Query: 266 PSRRDGAGHVLAAGGFI--VVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAAL 93
P R+ H++ + F+ ++ L Q V +GT GV+ + D+LP S D VA L
Sbjct: 6 PLRKSPTSHMVFSSFFLSFLLVFSILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATL 63
Query: 92 ------TSLDMYDFPHFVL 54
+ +YD H VL
Sbjct: 64 LKSAKIRNTRIYDADHSVL 82
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 470 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 357
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
family protein low similarity to RNA polymerase IIA
largest subunit [Trypanosoma brucei] GI:162215; contains
InterPro accession IPR000722: RNA polymerase, alpha
subunit
Length = 1453
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 463 TDTLARRRHRFRYGHLLISKIREEYP-DRIMNTYSVVPSPKVSDTV-VEPYNAHF 621
++ L++++H F YG L I E+ I++T ++ SP + V + P+ HF
Sbjct: 930 SEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHF 984
>At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family protein
low similarity to
2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
[Pseudomonas fluorescens] GI:1871461; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 317
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 493 FRYGHLLISKIREEYPDRIMNTYSVVPSPKVSDTVVE 603
F YG ++ KI E YPD + P ++DT+ E
Sbjct: 134 FSYGGMVAFKIAEAYPDMVRAIVVSGSIPTMTDTINE 170
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 233 AAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 54
AAGGF + I + + ++ VP G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 69 EIVHIQAGQCGNQIGAKFWEIISD 140
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,566
Number of Sequences: 28952
Number of extensions: 286147
Number of successful extensions: 872
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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