BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1290 (499 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 113 1e-26 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 68 7e-13 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 57 1e-09 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 53 2e-08 SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 1.6 SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 1.6 SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 1.6 SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 2.7 SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 4.8 SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 25 8.4 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 113 bits (273), Expect = 1e-26 Identities = 47/64 (73%), Positives = 55/64 (85%) Frame = +3 Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242 MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60 Query: 243 PRAI 254 PRA+ Sbjct: 61 PRAV 64 Score = 84.2 bits (199), Expect = 1e-17 Identities = 38/67 (56%), Positives = 46/67 (68%) Frame = +2 Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433 LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGH + R+ Sbjct: 65 LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREA 124 Query: 434 ESCDLLQ 454 E+CD LQ Sbjct: 125 EACDALQ 131 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 68.1 bits (159), Expect = 7e-13 Identities = 28/63 (44%), Positives = 44/63 (69%) Frame = +3 Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245 REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62 Query: 246 RAI 254 RAI Sbjct: 63 RAI 65 Score = 46.4 bits (105), Expect = 2e-06 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 2/44 (4%) Frame = +2 Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHS 379 L+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G+S Sbjct: 66 LIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYS 109 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 57.2 bits (132), Expect = 1e-09 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Frame = +3 Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 236 MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60 Query: 237 YVPRAI 254 YVPR+I Sbjct: 61 YVPRSI 66 Score = 52.8 bits (121), Expect = 3e-08 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Frame = +2 Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376 PR + VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GH Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGH 107 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 53.2 bits (122), Expect = 2e-08 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Frame = +2 Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376 PR + VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GH Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGH 111 Score = 51.2 bits (117), Expect = 8e-08 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Frame = +3 Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 224 MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60 Query: 225 SGGKYVPRAI 254 GK+VPR+I Sbjct: 61 GQGKFVPRSI 70 >SPBC19G7.16 |iws1||transcription elongation factor complex subunit Iws1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 27.1 bits (57), Expect = 1.6 Identities = 10/34 (29%), Positives = 22/34 (64%) Frame = +3 Query: 102 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 203 N++G E+++++ +DPT A + DLQ++ + Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166 >SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 967 Score = 27.1 bits (57), Expect = 1.6 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +2 Query: 230 RQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSR 382 R+V AP+H GT RS +FR ++ FGQ GN ++ + Sbjct: 486 REVFAPKH-ARRRLGTRFHSRSSHRPSVFRDNSVAFGQLDNGNTSSRARDK 535 >SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 630 Score = 27.1 bits (57), Expect = 1.6 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -2 Query: 402 IDELSTLRECPLAQLLPAPDCPKTKLSGRKICPKGPERTESMVPG 268 +DEL++L E ++ L D + ++ICP+G + +PG Sbjct: 206 VDELNSLSEKCFSKNLSIEDASEILSKVKEICPEGVYEGQLTLPG 250 >SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizosaccharomyces pombe|chr 1|||Manual Length = 506 Score = 26.2 bits (55), Expect = 2.7 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +2 Query: 296 GPFGQIFRPDNFVFGQSGAG-NNWA 367 GP+G +F P F+F +G NW+ Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWS 181 >SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 255 Score = 25.4 bits (53), Expect = 4.8 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 354 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 259 P+ PK L R I P GPE + + GS S Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51 >SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schizosaccharomyces pombe|chr 2|||Manual Length = 526 Score = 24.6 bits (51), Expect = 8.4 Identities = 9/37 (24%), Positives = 19/37 (51%) Frame = +2 Query: 278 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRV 388 M ++R + P N++FG++ G G+S ++ Sbjct: 109 MSNIRKAQVKILKNPGNYIFGRTEYGKRTYSGNSTKI 145 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,966,665 Number of Sequences: 5004 Number of extensions: 36623 Number of successful extensions: 104 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 196153982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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