Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1290
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   113   1e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    68   7e-13
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    57   1e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    53   2e-08
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.6  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   1.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   2.7  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   4.8  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   8.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  113 bits (273), Expect = 1e-26
 Identities = 47/64 (73%), Positives = 55/64 (85%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 243 PRAI 254
           PRA+
Sbjct: 61  PRAV 64



 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 38/67 (56%), Positives = 46/67 (68%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
           LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGH       +        R+ 
Sbjct: 65  LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREA 124

Query: 434 ESCDLLQ 454
           E+CD LQ
Sbjct: 125 EACDALQ 131


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 68.1 bits (159), Expect = 7e-13
 Identities = 28/63 (44%), Positives = 44/63 (69%)
 Frame = +3

Query: 66  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 246 RAI 254
           RAI
Sbjct: 63  RAI 65



 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +2

Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHS 379
           L+DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G+S
Sbjct: 66  LIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYS 109


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 236
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 237 YVPRAI 254
           YVPR+I
Sbjct: 61  YVPRSI 66



 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +2

Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
           PR + VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GH
Sbjct: 63  PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGH 107


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +2

Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
           PR + VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GH
Sbjct: 67  PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGH 111



 Score = 51.2 bits (117), Expect = 8e-08
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
 Frame = +3

Query: 63  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 224
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 225 SGGKYVPRAI 254
             GK+VPR+I
Sbjct: 61  GQGKFVPRSI 70


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 102 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 203
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 230 RQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSR 382
           R+V AP+H      GT    RS     +FR ++  FGQ   GN  ++   +
Sbjct: 486 REVFAPKH-ARRRLGTRFHSRSSHRPSVFRDNSVAFGQLDNGNTSSRARDK 535


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 402 IDELSTLRECPLAQLLPAPDCPKTKLSGRKICPKGPERTESMVPG 268
           +DEL++L E   ++ L   D  +     ++ICP+G    +  +PG
Sbjct: 206 VDELNSLSEKCFSKNLSIEDASEILSKVKEICPEGVYEGQLTLPG 250


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 296 GPFGQIFRPDNFVFGQSGAG-NNWA 367
           GP+G +F P  F+F  +G    NW+
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWS 181


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 354 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 259
           P+   PK  L  R I P GPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 278 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRV 388
           M ++R      +  P N++FG++  G     G+S ++
Sbjct: 109 MSNIRKAQVKILKNPGNYIFGRTEYGKRTYSGNSTKI 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,665
Number of Sequences: 5004
Number of extensions: 36623
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)