Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1290
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 125 1e-29
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 123 8e-29
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 122 2e-28
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 122 2e-28
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 121 2e-28
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 121 3e-28
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 119 1e-27
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 116 7e-27
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 116 9e-27
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 61 5e-10
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 60 8e-10
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 60 8e-10
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 59 1e-09
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 59 1e-09
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 58 4e-09
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 58 4e-09
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 55 2e-08
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 55 2e-08
At4g37190.1 68417.m05265 expressed protein 32 0.19
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 30 1.00
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 4.0
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 5.3
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 7.0
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 27 9.3
At4g14165.1 68417.m02187 F-box family protein-related similar to... 27 9.3
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 27 9.3
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 125 bits (302), Expect = 1e-29
Identities = 54/71 (76%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 239
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 240 VPRAISSTWSP 272
VPRA+ P
Sbjct: 61 VPRAVLMDLEP 71
Score = 95.1 bits (226), Expect = 2e-20
Identities = 43/67 (64%), Positives = 49/67 (73%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 66 LMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 126 ENCDCLQ 132
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 123 bits (296), Expect = 8e-29
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 243 PRAISSTWSP 272
PRAI P
Sbjct: 61 PRAILMDLEP 70
Score = 94.3 bits (224), Expect = 4e-20
Identities = 43/67 (64%), Positives = 49/67 (73%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 65 LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 124
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 125 ENCDCLQ 131
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 122 bits (293), Expect = 2e-28
Identities = 53/70 (75%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 92.7 bits (220), Expect = 1e-19
Identities = 42/67 (62%), Positives = 48/67 (71%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 125 ENCDCLQ 131
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 122 bits (293), Expect = 2e-28
Identities = 53/70 (75%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 92.7 bits (220), Expect = 1e-19
Identities = 42/67 (62%), Positives = 48/67 (71%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 125 ENCDCLQ 131
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 121 bits (292), Expect = 2e-28
Identities = 54/70 (77%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 92.7 bits (220), Expect = 1e-19
Identities = 39/41 (95%), Positives = 41/41 (100%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
Score = 35.5 bits (78), Expect = 0.020
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 382 EGAELVDSVLDVVRKEA 432
EGAEL+DSVLDVVRKEA
Sbjct: 108 EGAELIDSVLDVVRKEA 124
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 121 bits (291), Expect = 3e-28
Identities = 54/71 (76%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 239
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 240 VPRAISSTWSP 272
VPRA+ P
Sbjct: 61 VPRAVLMDLEP 71
Score = 96.3 bits (229), Expect = 1e-20
Identities = 44/67 (65%), Positives = 49/67 (73%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 66 LMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEA 125
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 126 ENCDCLQ 132
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 119 bits (286), Expect = 1e-27
Identities = 53/70 (75%), Positives = 58/70 (82%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/67 (65%), Positives = 49/67 (73%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 125 ENCDCLQ 131
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 116 bits (280), Expect = 7e-27
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/67 (65%), Positives = 49/67 (73%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 125 ENCDCLQ 131
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 116 bits (279), Expect = 9e-27
Identities = 49/70 (70%), Positives = 58/70 (82%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 243 PRAISSTWSP 272
PRA+ P
Sbjct: 61 PRAVLMDLEP 70
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/67 (65%), Positives = 49/67 (73%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHSRRVLSSSIQF*TSFERKR 433
L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGH ++
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
Query: 434 ESCDLLQ 454
E+CD LQ
Sbjct: 125 ENCDCLQ 131
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 48.4 bits (110), Expect = 3e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GH
Sbjct: 68 LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 60.1 bits (139), Expect = 8e-10
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GH
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 60.1 bits (139), Expect = 8e-10
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 236
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GH
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +3
Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 246 RAI 254
RA+
Sbjct: 63 RAL 65
Score = 39.5 bits (88), Expect = 0.001
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGH 376
L+DLEP ++ +++G + ++ +N GAGNNWA G+
Sbjct: 66 LIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGY 108
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +3
Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 246 RAI 254
RA+
Sbjct: 63 RAL 65
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGH 376
L+DLEP ++ +++G + ++ +N GAGNNWA G+
Sbjct: 66 LIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGY 108
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 57.6 bits (133), Expect = 4e-09
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GH
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 57.6 bits (133), Expect = 4e-09
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GH
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 55.2 bits (127), Expect = 2e-08
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GH
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 55.2 bits (127), Expect = 2e-08
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 236
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 237 YVPRAI 254
+VPRA+
Sbjct: 61 HVPRAV 66
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 257 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 376
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GH
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 32.3 bits (70), Expect = 0.19
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 230
MREIV IQ G+ N +G+ FW + G+ DP + + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 231 GKYVPRAISSTWSPAPWTLSA 293
Y PR +S A T+S+
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 29.9 bits (64), Expect = 1.00
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = -3
Query: 266 PSRRDGAGHVLAAGGFI--VVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAAL 93
P R+ H++ + F+ ++ L Q V +GT GV+ + D+LP S D VA L
Sbjct: 6 PLRKSPTSHMVFSSFFLSFLLVFSILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATL 63
Query: 92 ------TSLDMYDFPHFVL 54
+ +YD H VL
Sbjct: 64 LKSAKIRNTRIYDADHSVL 82
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 233 AAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 54
AAGGF + I + + ++ VP G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 69 EIVHIQAGQCGNQIGAKFWEIISD 140
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 84 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 176
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 111 GAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
G + W I+ + TG Y DL ER+++ +++A +Y P
Sbjct: 45 GPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTRQYKP 89
>At4g14165.1 68417.m02187 F-box family protein-related similar to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 268
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 396 ELSTLREC-PLAQLLPAPDCPKT 331
EL L C PL LLP CPKT
Sbjct: 17 ELPELNPCVPLGTLLPDKSCPKT 39
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 163 PVGSMPCSSEMISQNLAPIW 104
PVG C SE ++Q L +W
Sbjct: 655 PVGKEVCDSERVTQGLGAVW 674
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,157
Number of Sequences: 28952
Number of extensions: 222751
Number of successful extensions: 672
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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