Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1289
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    69   8e-13
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    27   2.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.9  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    26   5.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.9  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 4/174 (2%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLR----STNLP 315
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+  RR   ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 316 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVT 495
           ++      +  +++   T                       +S   + P   + G N V 
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140

Query: 496 KLVEXXXXXXXXXXXXXIPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLY 657
            L+E              P ELV+FLP++   KMG  +P  +      LG  ++
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCK-KMG--VPYAIVKNKARLGTVIH 191



 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXX 431
           R++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                  
Sbjct: 60  RRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANG 119

Query: 432 XXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                   +P  +     H       KKA+LV+IA DVDPI
Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPI 160


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 574 PSVMPVKMGRTIPAFVKGQVPALGCTLYTGKTCHIAL 684
           P  MPV    ++   +  Q+ ALGC +    T H+ L
Sbjct: 36  PVFMPVGTQASLKGVLPEQLDALGCKIMLNNTYHLGL 72


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 362  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLA-WMRIYLGHLTNLDK 213
            L+N ++ L  +L + L  +V++  H  TTL Y+L    + IY   + + DK
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 486  HSHQAGREKKAQLVVIAHDVDPI*AGSFSAKRYARKNG 599
            H +   +++  Q VVI HD++P  A   +A  +  ++G
Sbjct: 1069 HGYNPEKKELLQEVVIDHDLEPFEASKEAAHEFKLRHG 1106


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 574 PSVMPVKMGRTIPAFVKGQVPALGCTLYT 660
           P +  VK G TI    K  + + GCTLYT
Sbjct: 248 PELFHVKAGSTITE--KADIWSFGCTLYT 274


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 261 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 362
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 443 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 273
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,731
Number of Sequences: 5004
Number of extensions: 54214
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)