BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1289 (688 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 69 8e-13 SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy... 27 2.5 SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 3.4 SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 5.9 SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 26 5.9 SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.9 SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.8 >SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 68.5 bits (160), Expect = 8e-13 Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 4/174 (2%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLR----STNLP 315 NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+ RR ++ K P L Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83 Query: 316 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVT 495 ++ + +++ T +S + P + G N V Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140 Query: 496 KLVEXXXXXXXXXXXXXIPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLY 657 L+E P ELV+FLP++ KMG +P + LG ++ Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCK-KMG--VPYAIVKNKARLGTVIH 191 Score = 66.5 bits (155), Expect = 3e-12 Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXX 431 R++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET Sbjct: 60 RRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANG 119 Query: 432 XXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554 +P + H KKA+LV+IA DVDPI Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPI 160 >SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces pombe|chr 1|||Manual Length = 404 Score = 27.1 bits (57), Expect = 2.5 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +1 Query: 574 PSVMPVKMGRTIPAFVKGQVPALGCTLYTGKTCHIAL 684 P MPV ++ + Q+ ALGC + T H+ L Sbjct: 36 PVFMPVGTQASLKGVLPEQLDALGCKIMLNNTYHLGL 72 >SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 26.6 bits (56), Expect = 3.4 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -3 Query: 362 LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLA-WMRIYLGHLTNLDK 213 L+N ++ L +L + L +V++ H TTL Y+L + IY + + DK Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740 >SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1842 Score = 25.8 bits (54), Expect = 5.9 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 486 HSHQAGREKKAQLVVIAHDVDPI*AGSFSAKRYARKNG 599 H + +++ Q VVI HD++P A +A + ++G Sbjct: 1069 HGYNPEKKELLQEVVIDHDLEPFEASKEAAHEFKLRHG 1106 >SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 25.8 bits (54), Expect = 5.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 574 PSVMPVKMGRTIPAFVKGQVPALGCTLYT 660 P + VK G TI K + + GCTLYT Sbjct: 248 PELFHVKAGSTITE--KADIWSFGCTLYT 274 >SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Par2|Schizosaccharomyces pombe|chr 1|||Manual Length = 627 Score = 25.8 bits (54), Expect = 5.9 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 261 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 362 KAVL LK P IN F + L + +F++LE Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496 >SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 462 Score = 25.4 bits (53), Expect = 7.8 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = -3 Query: 443 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 273 L F L +S Q FP FS L+NL + ++ Q L + R +T+ Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,735,731 Number of Sequences: 5004 Number of extensions: 54214 Number of successful extensions: 165 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 317927284 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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