Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1289
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 77 1e-14
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 77 1e-14
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 60 1e-09
07_03_1414 - 26403361-26403969 33 0.28
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891 32 0.37
07_03_1422 + 26462871-26463434,26463772-26463897 31 0.65
07_03_1413 - 26396426-26396890 31 0.65
04_04_0188 - 23433753-23436572 29 2.6
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214... 29 4.6
01_01_0522 - 3834551-3835451,3835992-3836572 29 4.6
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275... 28 6.0
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.0
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 28 8.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/114 (40%), Positives = 58/114 (50%)
Frame = +3
Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392
L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 102
Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
+P + H + KAQLVVIAHDVDPI
Sbjct: 103 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 156
Score = 60.5 bits (140), Expect = 1e-09
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 1/146 (0%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327
NPLFEKRPK F IG + P +DL RFV+WPK +RI +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 328 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504
+ L F + ++ + P + G N VT L+
Sbjct: 82 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139
Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSV 582
E P ELV++LP++
Sbjct: 140 EQSKAQLVVIAHDVDPIELVVWLPAL 165
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/114 (40%), Positives = 58/114 (50%)
Frame = +3
Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392
L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 86
Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
+P + H + KAQLVVIAHDVDPI
Sbjct: 87 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 140
Score = 60.5 bits (140), Expect = 1e-09
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 1/146 (0%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327
NPLFEKRPK F IG + P +DL RFV+WPK +RI +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 328 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504
+ L F + ++ + P + G N VT L+
Sbjct: 66 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123
Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSV 582
E P ELV++LP++
Sbjct: 124 EQSKAQLVVIAHDVDPIELVVWLPAL 149
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = +1
Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARR 264
NPLFEKRPK F IG + P +DL RFVRWPK +RI +R
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61
Score = 52.0 bits (119), Expect = 4e-07
Identities = 36/100 (36%), Positives = 49/100 (49%)
Frame = +3
Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
RQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 59 RQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEA-----------------E 101
Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
+P + H + KAQLVVIAHDVDPI
Sbjct: 102 GKTVEAKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPI 141
>07_03_1414 - 26403361-26403969
Length = 202
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118
A +P+ + A + P + G++ + + +T G+ L P LEE + GL L+D
Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
Length = 155
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 271 STAFWRGCGYTWAILQIWTSPELAECPDQWQSSLASSRREDSRSSWAQP 125
S +WRGCGY +I T+ A C +W+SS R+ S +P
Sbjct: 19 SKRWWRGCGYGRCSGEIHTAAHQAHC-GRWRSSGPQRRQRRDGGSLMKP 66
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118
A +P+ + + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118
A +P+ + + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>04_04_0188 - 23433753-23436572
Length = 939
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 198 SANSGLVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLD 326
SA + L Q+CK + RQ A R + PPP + + LD
Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63
>09_04_0464 +
17820164-17820181,17820972-17821065,17821251-17821429,
17821959-17822009,17822683-17822739,17822854-17822974,
17823187-17823253,17823342-17823383,17823629-17823734,
17823864-17823974,17824248-17824319,17824423-17824524,
17824597-17824758,17824961-17825119
Length = 446
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 574 PSVMPVKMGRTIPAFVKGQVPALGCTLYTGKTCHIAL 684
P MPV TI Q+ +GC + G T H+ L
Sbjct: 29 PLFMPVGTQGTIKGLTTDQLEEIGCQIILGNTYHLEL 65
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 681 SNVACLAGVQSAPEGGDLPLDKCRYGTPHFYGHNAWQKKNQLK 553
S++ + V + GGD P CRY PH W+ +L+
Sbjct: 28 SDIGSSSSVSARSFGGDTPASSCRY-KPHKANQAEWEAIRRLR 69
>07_03_1534 +
27526170-27526265,27527030-27527091,27527488-27527542,
27528168-27528266,27528346-27528432,27528951-27529067,
27529479-27529571,27529915-27529945,27530188-27530357
Length = 269
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 547 IPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYTGKT 669
+PF ++ +L SV PV +G + A G +P +Y G T
Sbjct: 144 LPFNMLNYLLSVTPVGIGEYMLASWLGMMPITLALVYVGTT 184
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 193 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 101
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 642 EGGDLP-LDKCRYGTPHFYGHNAWQKKNQ 559
+GG P LDK + TP F G NA Q K+Q
Sbjct: 718 KGGATPSLDKPKRRTPAFSGRNAGQDKSQ 746
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,550,573
Number of Sequences: 37544
Number of extensions: 427919
Number of successful extensions: 1314
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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