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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1289
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    77   1e-14
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    77   1e-14
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    60   1e-09
07_03_1414 - 26403361-26403969                                         33   0.28 
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891     32   0.37 
07_03_1422 + 26462871-26463434,26463772-26463897                       31   0.65 
07_03_1413 - 26396426-26396890                                         31   0.65 
04_04_0188 - 23433753-23436572                                         29   2.6  
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214...    29   4.6  
01_01_0522 - 3834551-3835451,3835992-3836572                           29   4.6  
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275...    28   6.0  
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128...    28   6.0  
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989...    28   8.0  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 46/114 (40%), Positives = 58/114 (50%)
 Frame = +3

Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392
           L +  K  +V    RQ+ +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE     
Sbjct: 44  LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 102

Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                                +P  +     H      + KAQLVVIAHDVDPI
Sbjct: 103 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 156



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 1/146 (0%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327
           NPLFEKRPK F IG  + P +DL RFV+WPK +RI  +R       K P       R   
Sbjct: 22  NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81

Query: 328 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504
           + L    F    +                          ++  + P   + G N VT L+
Sbjct: 82  KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139

Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSV 582
           E              P ELV++LP++
Sbjct: 140 EQSKAQLVVIAHDVDPIELVVWLPAL 165


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 46/114 (40%), Positives = 58/114 (50%)
 Frame = +3

Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392
           L +  K  +V    RQ+ +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE     
Sbjct: 28  LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 86

Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                                +P  +     H      + KAQLVVIAHDVDPI
Sbjct: 87  KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 140



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 1/146 (0%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327
           NPLFEKRPK F IG  + P +DL RFV+WPK +RI  +R       K P       R   
Sbjct: 6   NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65

Query: 328 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504
           + L    F    +                          ++  + P   + G N VT L+
Sbjct: 66  KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123

Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSV 582
           E              P ELV++LP++
Sbjct: 124 EQSKAQLVVIAHDVDPIELVVWLPAL 149


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARR 264
           NPLFEKRPK F IG  + P +DL RFVRWPK +RI  +R
Sbjct: 23  NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 36/100 (36%), Positives = 49/100 (49%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQ+ VL++RLKVPP +NQFT+TLDK       ++L++ + E                   
Sbjct: 59  RQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEA-----------------E 101

Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                  +P  +     H      + KAQLVVIAHDVDPI
Sbjct: 102 GKTVEAKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPI 141


>07_03_1414 - 26403361-26403969
          Length = 202

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118
           A  +P+ + A +  P +  G++  + + +T G+ L P LEE +    GL L+D
Sbjct: 70  AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122


>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
          Length = 155

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 271 STAFWRGCGYTWAILQIWTSPELAECPDQWQSSLASSRREDSRSSWAQP 125
           S  +WRGCGY     +I T+   A C  +W+SS    R+     S  +P
Sbjct: 19  SKRWWRGCGYGRCSGEIHTAAHQAHC-GRWRSSGPQRRQRRDGGSLMKP 66


>07_03_1422 + 26462871-26463434,26463772-26463897
          Length = 229

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118
           A  +P+ +   +  P Y  G+V  + + +T G+ L P LEE      GL L D
Sbjct: 68  AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120


>07_03_1413 - 26396426-26396890
          Length = 154

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118
           A  +P+ +   +  P Y  G+V  + + +T G+ L P LEE      GL L D
Sbjct: 22  AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 198 SANSGLVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLD 326
           SA + L Q+CK   +    RQ A    R + PPP + +   LD
Sbjct: 21  SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63


>09_04_0464 +
           17820164-17820181,17820972-17821065,17821251-17821429,
           17821959-17822009,17822683-17822739,17822854-17822974,
           17823187-17823253,17823342-17823383,17823629-17823734,
           17823864-17823974,17824248-17824319,17824423-17824524,
           17824597-17824758,17824961-17825119
          Length = 446

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 574 PSVMPVKMGRTIPAFVKGQVPALGCTLYTGKTCHIAL 684
           P  MPV    TI      Q+  +GC +  G T H+ L
Sbjct: 29  PLFMPVGTQGTIKGLTTDQLEEIGCQIILGNTYHLEL 65


>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 681 SNVACLAGVQSAPEGGDLPLDKCRYGTPHFYGHNAWQKKNQLK 553
           S++   + V +   GGD P   CRY  PH      W+   +L+
Sbjct: 28  SDIGSSSSVSARSFGGDTPASSCRY-KPHKANQAEWEAIRRLR 69


>07_03_1534 +
           27526170-27526265,27527030-27527091,27527488-27527542,
           27528168-27528266,27528346-27528432,27528951-27529067,
           27529479-27529571,27529915-27529945,27530188-27530357
          Length = 269

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 547 IPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYTGKT 669
           +PF ++ +L SV PV +G  + A   G +P     +Y G T
Sbjct: 144 LPFNMLNYLLSVTPVGIGEYMLASWLGMMPITLALVYVGTT 184


>02_04_0587 +
           24110333-24110584,24111193-24111261,24112347-24112850,
           24113094-24113336
          Length = 355

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 193 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 101
           P    SSLA +RR  +R   AQP  PP  RR
Sbjct: 24  PSSAASSLAFARRAAARPLRAQPLLPPAARR 54


>04_04_1062 -
           30498158-30498271,30498358-30498518,30498606-30498924,
           30499412-30499477,30499601-30499726,30499821-30499961,
           30500482-30500535,30501508-30501636,30501733-30501870,
           30501993-30502061,30502135-30502203,30502468-30502623,
           30503795-30503895,30503986-30504136,30504475-30504520,
           30504539-30504637,30504796-30504928,30505018-30505195,
           30505282-30505524,30505612-30505680,30505986-30506085,
           30506898-30507007
          Length = 923

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 642 EGGDLP-LDKCRYGTPHFYGHNAWQKKNQ 559
           +GG  P LDK +  TP F G NA Q K+Q
Sbjct: 718 KGGATPSLDKPKRRTPAFSGRNAGQDKSQ 746


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,550,573
Number of Sequences: 37544
Number of extensions: 427919
Number of successful extensions: 1314
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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