BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1289 (688 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 77 1e-14 08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 77 1e-14 01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 60 1e-09 07_03_1414 - 26403361-26403969 33 0.28 03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891 32 0.37 07_03_1422 + 26462871-26463434,26463772-26463897 31 0.65 07_03_1413 - 26396426-26396890 31 0.65 04_04_0188 - 23433753-23436572 29 2.6 09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214... 29 4.6 01_01_0522 - 3834551-3835451,3835992-3836572 29 4.6 07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275... 28 6.0 02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.0 04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 28 8.0 >09_04_0677 - 19388888-19389019,19389124-19389216,19389317-19389445, 19389559-19389728,19390280-19390481,19390576-19390623, 19390797-19390799 Length = 258 Score = 77.0 bits (181), Expect = 1e-14 Identities = 46/114 (40%), Positives = 58/114 (50%) Frame = +3 Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392 L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 102 Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554 +P + H + KAQLVVIAHDVDPI Sbjct: 103 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 156 Score = 60.5 bits (140), Expect = 1e-09 Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 1/146 (0%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327 NPLFEKRPK F IG + P +DL RFV+WPK +RI +R K P R Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81 Query: 328 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504 + L F + ++ + P + G N VT L+ Sbjct: 82 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139 Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSV 582 E P ELV++LP++ Sbjct: 140 EQSKAQLVVIAHDVDPIELVVWLPAL 165 >08_02_0211 - 14333553-14333684,14333795-14333887,14334019-14334105, 14334220-14334389,14334985-14335186,14335604-14335606 Length = 228 Score = 77.0 bits (181), Expect = 1e-14 Identities = 46/114 (40%), Positives = 58/114 (50%) Frame = +3 Query: 213 LVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 392 L + K +V RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 86 Query: 393 XXXXXXXXXXXXXXXXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554 +P + H + KAQLVVIAHDVDPI Sbjct: 87 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 140 Score = 60.5 bits (140), Expect = 1e-09 Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 1/146 (0%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327 NPLFEKRPK F IG + P +DL RFV+WPK +RI +R K P R Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65 Query: 328 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504 + L F + ++ + P + G N VT L+ Sbjct: 66 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123 Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSV 582 E P ELV++LP++ Sbjct: 124 EQSKAQLVVIAHDVDPIELVVWLPAL 149 >01_07_0018 - 40488702-40488833,40488928-40489020,40489125-40489253, 40489379-40489500,40490292-40490544,40490636-40490638 Length = 243 Score = 60.5 bits (140), Expect = 1e-09 Identities = 25/39 (64%), Positives = 29/39 (74%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARR 264 NPLFEKRPK F IG + P +DL RFVRWPK +RI +R Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61 Score = 52.0 bits (119), Expect = 4e-07 Identities = 36/100 (36%), Positives = 49/100 (49%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434 RQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E Sbjct: 59 RQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEA-----------------E 101 Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554 +P + H + KAQLVVIAHDVDPI Sbjct: 102 GKTVEAKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPI 141 >07_03_1414 - 26403361-26403969 Length = 202 Score = 32.7 bits (71), Expect = 0.28 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = -2 Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118 A +P+ + A + P + G++ + + +T G+ L P LEE + GL L+D Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122 >03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891 Length = 155 Score = 32.3 bits (70), Expect = 0.37 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -1 Query: 271 STAFWRGCGYTWAILQIWTSPELAECPDQWQSSLASSRREDSRSSWAQP 125 S +WRGCGY +I T+ A C +W+SS R+ S +P Sbjct: 19 SKRWWRGCGYGRCSGEIHTAAHQAHC-GRWRSSGPQRRQRRDGGSLMKP 66 >07_03_1422 + 26462871-26463434,26463772-26463897 Length = 229 Score = 31.5 bits (68), Expect = 0.65 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -2 Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118 A +P+ + + P Y G+V + + +T G+ L P LEE GL L D Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120 >07_03_1413 - 26396426-26396890 Length = 154 Score = 31.5 bits (68), Expect = 0.65 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -2 Query: 276 AEVQPSGVDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 118 A +P+ + + P Y G+V + + +T G+ L P LEE GL L D Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74 >04_04_0188 - 23433753-23436572 Length = 939 Score = 29.5 bits (63), Expect = 2.6 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 198 SANSGLVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQTLD 326 SA + L Q+CK + RQ A R + PPP + + LD Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63 >09_04_0464 + 17820164-17820181,17820972-17821065,17821251-17821429, 17821959-17822009,17822683-17822739,17822854-17822974, 17823187-17823253,17823342-17823383,17823629-17823734, 17823864-17823974,17824248-17824319,17824423-17824524, 17824597-17824758,17824961-17825119 Length = 446 Score = 28.7 bits (61), Expect = 4.6 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +1 Query: 574 PSVMPVKMGRTIPAFVKGQVPALGCTLYTGKTCHIAL 684 P MPV TI Q+ +GC + G T H+ L Sbjct: 29 PLFMPVGTQGTIKGLTTDQLEEIGCQIILGNTYHLEL 65 >01_01_0522 - 3834551-3835451,3835992-3836572 Length = 493 Score = 28.7 bits (61), Expect = 4.6 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = -2 Query: 681 SNVACLAGVQSAPEGGDLPLDKCRYGTPHFYGHNAWQKKNQLK 553 S++ + V + GGD P CRY PH W+ +L+ Sbjct: 28 SDIGSSSSVSARSFGGDTPASSCRY-KPHKANQAEWEAIRRLR 69 >07_03_1534 + 27526170-27526265,27527030-27527091,27527488-27527542, 27528168-27528266,27528346-27528432,27528951-27529067, 27529479-27529571,27529915-27529945,27530188-27530357 Length = 269 Score = 28.3 bits (60), Expect = 6.0 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 547 IPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYTGKT 669 +PF ++ +L SV PV +G + A G +P +Y G T Sbjct: 144 LPFNMLNYLLSVTPVGIGEYMLASWLGMMPITLALVYVGTT 184 >02_04_0587 + 24110333-24110584,24111193-24111261,24112347-24112850, 24113094-24113336 Length = 355 Score = 28.3 bits (60), Expect = 6.0 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -1 Query: 193 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 101 P SSLA +RR +R AQP PP RR Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54 >04_04_1062 - 30498158-30498271,30498358-30498518,30498606-30498924, 30499412-30499477,30499601-30499726,30499821-30499961, 30500482-30500535,30501508-30501636,30501733-30501870, 30501993-30502061,30502135-30502203,30502468-30502623, 30503795-30503895,30503986-30504136,30504475-30504520, 30504539-30504637,30504796-30504928,30505018-30505195, 30505282-30505524,30505612-30505680,30505986-30506085, 30506898-30507007 Length = 923 Score = 27.9 bits (59), Expect = 8.0 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -2 Query: 642 EGGDLP-LDKCRYGTPHFYGHNAWQKKNQ 559 +GG P LDK + TP F G NA Q K+Q Sbjct: 718 KGGATPSLDKPKRRTPAFSGRNAGQDKSQ 746 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,550,573 Number of Sequences: 37544 Number of extensions: 427919 Number of successful extensions: 1314 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1312 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1744894544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -