Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1289
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        47   2e-05
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           29   3.5  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 45/100 (45%), Positives = 53/100 (53%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET                  
Sbjct: 65  RQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEG 124

Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                  +P  +     H       KKAQLVVIAHDVDPI
Sbjct: 125 KEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPI 164



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARR 264
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++  ++
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQK 67


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/70 (38%), Positives = 30/70 (42%)
 Frame = +3

Query: 345 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIPIRHKHSHQAGREKKAQL 524
           LFK+L KYRPET                         +P  +     H       KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 525 VVIAHDVDPI 554
           VVIAHDVDPI
Sbjct: 64  VVIAHDVDPI 73


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 242 ISASTPEGCTSASSESAPSDQPIYPDTG 325
           I+A      T+ASSE+APS  P  PD G
Sbjct: 34  IAARMGSASTAASSEAAPSSAPSMPDYG 61


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 482 VPDRDGVGPLWWRLIFLGNLSFSSFPQPLFPG 387
           + + D   P WW ++F+G + FS     L+PG
Sbjct: 48  IEEYDNPLPKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 132  AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPRQK 263
            +Q++R++ + + AKE  +W   S    L    +  Q  PH  +K
Sbjct: 2082 SQDERQARIEQLAKERQNWRMDSVRDSLQATAEQHQTEPHEEKK 2125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,537,827
Number of Sequences: 59808
Number of extensions: 445830
Number of successful extensions: 1375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)