Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1289
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    76   2e-14
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    64   7e-11
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    63   2e-10
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    63   2e-10
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.027
Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 40/100 (40%), Positives = 54/100 (54%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                  
Sbjct: 66  RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAG 125

Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                  RPNT+        +    ++AQLV+IAHDV+P+
Sbjct: 126 KKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPL 165



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 1/180 (0%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+  +        K P           
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 328 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504
               R AF    +                           + +R P   R G NT+T+LV
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKR-PNTVRHGVNTITRLV 148

Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYTGKTCHIAL 684
           E              P E+VL LP++   +      A +KG+  +LG  +    T  +AL
Sbjct: 149 ETRRAQLVLIAHDVNPLEIVLHLPAL--CRKYNVPYAIIKGKA-SLGTVVRRKTTAAVAL 205


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 40/100 (40%), Positives = 54/100 (54%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                  
Sbjct: 66  RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES------------------ 107

Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                  RPNT+        +    ++AQLV+IAHDV+P+
Sbjct: 108 --TEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPL 145



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 64


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLD 326
           RQ A+LQ+RLKVPP INQF   LD
Sbjct: 169 RQSAILQKRLKVPPTINQFRTALD 192


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 380
           RQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 169 RQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 422 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 303
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +1

Query: 160 EKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWTRLQL 339
           +K+  N A G GI+  +     V+   +  +H R + FS +   P+  + +P  WTRLQ 
Sbjct: 583 KKKTDNDANGNGIKRIKS-EIIVKQETFTDMHGRNVPFSPM---PMPGS-VPPDWTRLQS 637

Query: 340 RAFS 351
            +FS
Sbjct: 638 PSFS 641


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 295 LRSTNLPRHWTRLQLRA 345
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = +3

Query: 138 EDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQ 317
           + RE  L+E   EL +    S  S     C +           V    +KV   I+QF  
Sbjct: 71  QTREKGLKE-LMELINTENSSIESSYEHFCGLVAQLTTDGSPTVRMLTMKV---ISQFLT 126

Query: 318 TLDKTTAKGLFKIL 359
            L K+ +KGL KI+
Sbjct: 127 KLKKSASKGLKKII 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,898
Number of Sequences: 27780
Number of extensions: 324607
Number of successful extensions: 878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)