BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1289 (688 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 76 2e-14 AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 64 7e-11 AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 63 2e-10 AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 63 2e-10 AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.027 Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical pr... 28 7.2 U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.2 AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 27 9.5 >AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform a protein. Length = 265 Score = 76.2 bits (179), Expect = 2e-14 Identities = 40/100 (40%), Positives = 54/100 (54%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434 RQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ Sbjct: 66 RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAG 125 Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554 RPNT+ + ++AQLV+IAHDV+P+ Sbjct: 126 KKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPL 165 Score = 70.1 bits (164), Expect = 1e-12 Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 1/180 (0%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWT 327 NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+ + K P Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89 Query: 328 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSRSGTNTVTKLV 504 R AF + + +R P R G NT+T+LV Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKR-PNTVRHGVNTITRLV 148 Query: 505 EXXXXXXXXXXXXXIPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYTGKTCHIAL 684 E P E+VL LP++ + A +KG+ +LG + T +AL Sbjct: 149 ETRRAQLVLIAHDVNPLEIVLHLPAL--CRKYNVPYAIIKGKA-SLGTVVRRKTTAAVAL 205 >AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform c protein. Length = 245 Score = 64.5 bits (150), Expect = 7e-11 Identities = 40/100 (40%), Positives = 54/100 (54%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434 RQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ Sbjct: 66 RQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES------------------ 107 Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554 RPNT+ + ++AQLV+IAHDV+P+ Sbjct: 108 --TEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPL 145 Score = 62.9 bits (146), Expect = 2e-10 Identities = 25/35 (71%), Positives = 31/35 (88%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252 NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+ Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 64 >AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical protein Y73B3A.18b protein. Length = 199 Score = 62.9 bits (146), Expect = 2e-10 Identities = 25/35 (71%), Positives = 31/35 (88%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252 NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+ Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167 Score = 39.5 bits (88), Expect = 0.002 Identities = 17/24 (70%), Positives = 19/24 (79%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLD 326 RQ A+LQ+RLKVPP INQF LD Sbjct: 169 RQSAILQKRLKVPPTINQFRTALD 192 >AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical protein Y73B3A.18a protein. Length = 234 Score = 62.9 bits (146), Expect = 2e-10 Identities = 25/35 (71%), Positives = 31/35 (88%) Frame = +1 Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRI 252 NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+ Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRL 167 Score = 60.1 bits (139), Expect = 1e-09 Identities = 26/42 (61%), Positives = 33/42 (78%) Frame = +3 Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 380 RQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ Sbjct: 169 RQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210 >AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine receptor, class ab (class a-like) protein 6 protein. Length = 330 Score = 35.9 bits (79), Expect = 0.027 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%) Frame = -3 Query: 422 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 303 SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++ Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205 >Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical protein R13.4 protein. Length = 803 Score = 27.9 bits (59), Expect = 7.2 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +1 Query: 160 EKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARRLYFSVV*KCPLRSTNLPRHWTRLQL 339 +K+ N A G GI+ + V+ + +H R + FS + P+ + +P WTRLQ Sbjct: 583 KKKTDNDANGNGIKRIKS-EIIVKQETFTDMHGRNVPFSPM---PMPGS-VPPDWTRLQS 637 Query: 340 RAFS 351 +FS Sbjct: 638 PSFS 641 >U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical protein F07F6.4 protein. Length = 529 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +1 Query: 295 LRSTNLPRHWTRLQLRA 345 +RSTNL +WT LQLRA Sbjct: 65 VRSTNLDTNWTWLQLRA 81 >AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical protein Y54E10A.11 protein. Length = 1446 Score = 27.5 bits (58), Expect = 9.5 Identities = 22/74 (29%), Positives = 31/74 (41%) Frame = +3 Query: 138 EDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPRQKAVLQRRLKVPPPINQFTQ 317 + RE L+E EL + S S C + V +KV I+QF Sbjct: 71 QTREKGLKE-LMELINTENSSIESSYEHFCGLVAQLTTDGSPTVRMLTMKV---ISQFLT 126 Query: 318 TLDKTTAKGLFKIL 359 L K+ +KGL KI+ Sbjct: 127 KLKKSASKGLKKII 140 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,579,898 Number of Sequences: 27780 Number of extensions: 324607 Number of successful extensions: 878 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 875 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1571291122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -