Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1289
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.3  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 476 PAQTQSPSWSREEGAACG 529
           P  T  P+W++ +  ACG
Sbjct: 107 PKLTPYPNWAQNKAGACG 124


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 343 PLAVVLSSVWVNWLIGG-GTFRRR*STAFWRGCGYTWAILQIWTS 212
           P+ ++  S+     IGG G F+       ++G GY   +L  WT+
Sbjct: 71  PMFLMELSLGQMMTIGGLGVFK---IAPIFKGIGYATCVLSCWTN 112


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 343 PLAVVLSSVWVNWLIGG-GTFRRR*STAFWRGCGYTWAILQIWTS 212
           P+ ++  S+     IGG G F+       ++G GY   +L  WT+
Sbjct: 124 PMFLMELSLGQMMTIGGLGVFK---IAPIFKGIGYATCVLSCWTN 165


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 PFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYT 660
           PF  VLF+ S+  + +    P   + +   L   LYT
Sbjct: 178 PFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYT 214


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 PFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYT 660
           PF  VLF+ S+  + +    P   + +   L   LYT
Sbjct: 216 PFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYT 252


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 606  GTPHFYGHNAWQKKNQLKWDQ 544
            G P  Y     +KKNQ +W+Q
Sbjct: 1488 GCPMIYFVVEHKKKNQQEWNQ 1508


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 464 HHPDPAQTQSP 496
           HHPDP +   P
Sbjct: 283 HHPDPGEVDLP 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,667
Number of Sequences: 438
Number of extensions: 4156
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)