Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1289
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    79   4e-15
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            78   5e-15
At1g03260.1 68414.m00304 expressed protein                             31   0.95 
At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m...    28   5.0  
At5g19070.1 68418.m02267 expressed protein                             28   5.0  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   5.0  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   8.8  
At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein ...    27   8.8  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 45/100 (45%), Positives = 53/100 (53%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE                   
Sbjct: 56  RQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAE 114

Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                  +P  +     H      + KAQLVVIAHDVDPI
Sbjct: 115 GKPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI 154



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARR 264
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+  ++
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 58


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 44/100 (44%), Positives = 53/100 (53%)
 Frame = +3

Query: 255 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 434
           RQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE                   
Sbjct: 57  RQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAE 115

Query: 435 XXXXXXXRPNTIPIRHKHSHQAGREKKAQLVVIAHDVDPI 554
                  +P  +     H      + KAQLVVIAHDVDPI
Sbjct: 116 GKPSESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI 155



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +1

Query: 148 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIHARR 264
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+  ++
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 59


>At1g03260.1 68414.m00304 expressed protein
          Length = 274

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 IPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYTGKT 669
           +PF ++ +L SV PV++G  + A   G +P     +Y G T
Sbjct: 146 LPFNMLNYLLSVTPVRLGEYMLATWLGMMPITFALVYVGTT 186


>At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila
           melanogaster, EMBL:AE003739
          Length = 549

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 186 WSGHSANSGLVQICKMAQVYPHPRQKAVLQRRLKVPPPINQ 308
           + GHS N+ L++   +A+  P   +K     ++K PP + +
Sbjct: 312 YEGHSVNTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQK 352


>At5g19070.1 68418.m02267 expressed protein
          Length = 280

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 IPFELVLFLPSVMPVKMGRTIPAFVKGQVPALGCTLYTGKT 669
           +PF ++ +L SV P+++G  + +   G +P     +Y G T
Sbjct: 144 LPFSMLNYLLSVTPIRLGPYLLSSWLGMMPITLALVYVGTT 184


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 467  GVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 315
            G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 973  GMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 434 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 339
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


>At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein
           (FLA8)
          Length = 420

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 230 DGPS-ISASTPEGCTSASSESAPSDQP 307
           D PS  +AS P   T  S ESAPSD P
Sbjct: 356 DAPSPTAASPPAPPTDESPESAPSDSP 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,970,575
Number of Sequences: 28952
Number of extensions: 313829
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)