Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1286
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    28   0.81 
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   2.5  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    24   9.9  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 37  RHAKRAQEWQRDAQPSRTQQPVILDIINSSRH 132
           +  KRA EW+  ++ ++ +Q  ILDII S R+
Sbjct: 711 KFGKRASEWKSSSKLNQARQ-TILDIIGSKRN 741


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 394 PAVTPARQPPPA*DTAPPYHHRP 462
           P  T   QP P   TA P+ HRP
Sbjct: 250 PLTTEYMQPAPPNCTASPFEHRP 272


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 46  KRAQEWQRDAQPSRTQQP 99
           +R Q+ Q+  QP +TQQP
Sbjct: 157 QRQQQQQQSQQPQQTQQP 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,539
Number of Sequences: 5004
Number of extensions: 23598
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)