Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1286
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 29 1.8
12_01_0197 + 1456296-1456668,1456930-1458746 29 2.4
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 29 2.4
06_01_0136 + 1043888-1044487 29 2.4
01_04_0116 + 16189250-16189411,16189577-16190104 28 3.2
09_04_0508 + 18203079-18203900 28 4.3
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 4.3
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 5.6
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 27 7.4
02_05_0979 + 33268294-33269595 27 7.4
02_05_0686 - 30900748-30902167,30903442-30904742 27 7.4
01_01_0070 - 542603-542686,542803-543441 27 7.4
09_02_0369 - 8012470-8013120 27 9.8
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 27 9.8
04_04_0801 + 28153971-28154327 27 9.8
04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912 27 9.8
02_04_0413 + 22681957-22682035,22682253-22682788 27 9.8
02_02_0580 + 11757667-11758258,11758419-11758572,11758682-117587... 27 9.8
01_06_0146 + 26969011-26969995,26970878-26970930 27 9.8
>08_01_0051 -
355392-355450,355507-355634,356271-356425,
356883-357012,357600-357739,358384-358552,360286-360557
Length = 350
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 23 TSTRVDMRSARRNGSATRSRRERNN 97
+S R D+R+AR +ATRSRR++ N
Sbjct: 22 SSQRHDIRTARPTPNATRSRRDQGN 46
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 331 AQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426
AQP+ C+ L P +CH +P TP PP
Sbjct: 202 AQPQTCMTHGLCGPYGICHYSP--TPRCSCPP 231
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 331 AQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426
AQP+ C+ L P +CH +P TP PP
Sbjct: 607 AQPQTCMTHGLCGPYGICHYSP--TPRCSCPP 636
>06_01_0136 + 1043888-1044487
Length = 199
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 319 TEAQAQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426
T+ + PR CLLG LV +A A + +PPP
Sbjct: 2 TKIRGHPRRCLLGALVGAIAATALVIAASFVLRPPP 37
>01_04_0116 + 16189250-16189411,16189577-16190104
Length = 229
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 370 PVALCHRAPAVTPARQPPPA*DTAPPYHHRP 462
P+ + HR P+ +P PP + TA HHRP
Sbjct: 16 PLVVSHRLPSFSPPPLPPVS-GTALCRHHRP 45
>09_04_0508 + 18203079-18203900
Length = 273
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 361 LVWPVALCHRAPAVTPARQPPPA*D---TAPPYHH 456
++ PV L AP+ TPA P PA D + P HH
Sbjct: 185 VIEPVELFKPAPSPTPAPSPAPAADAPKASKPAHH 219
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 370 PVALCHRAPAVTPARQPPPA*DTAPP 447
P+ + A + P R PPP+ TAPP
Sbjct: 57 PIPIFRAAASSRPPRPPPPSTTTAPP 82
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 325 AQAQPRLCLLGDLVWPVALCHRAPAVTPARQPPPA*DTA 441
AQ P L + PV L APA+ P PPP TA
Sbjct: 56 AQGHPSLAVSHHTA-PVLLTTAAPALAPTPTPPPPSSTA 93
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 353 WGIWCGRWRSVTGRRQSRQHASRLLLE 433
W +WCG RS GRR + S + E
Sbjct: 64 WWMWCGLRRSKAGRRGAPVQGSHMSAE 90
>02_05_0979 + 33268294-33269595
Length = 433
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 340 RLCLLGDLVWPV-ALCHRAPAVTPARQPPPA*DTAPPYHH 456
R C +VW V AL P+ + + +PP A T PP H
Sbjct: 185 RCCSPATVVWEVLALDGDEPSPSSSWRPPAAASTTPPPRH 224
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 379 APPATPDPPGDRGGAELEPPSG 314
+PP P P G +GG PP G
Sbjct: 363 SPPPPPPPGGKKGGPPPPPPKG 384
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 391 APAVTPARQPPPA*DTAPP 447
APAV P PPP APP
Sbjct: 74 APAVAPVTPPPPTPKKAPP 92
>09_02_0369 - 8012470-8013120
Length = 216
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 394 PAVTPARQPPPA*DTAPPYHHR 459
PAV P PPP A PY +R
Sbjct: 79 PAVLPPEPPPPRRPAATPYSNR 100
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 356 GIWCGRWRSVTGR 394
G+W GRWR + GR
Sbjct: 40 GVWPGRWREIGGR 52
>04_04_0801 + 28153971-28154327
Length = 118
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 356 GIWCGRWRSVTGR 394
G+W GRWR + GR
Sbjct: 3 GVWPGRWREIGGR 15
>04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912
Length = 103
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 356 GIWCGRWRSVTGR 394
G+W GRWR + GR
Sbjct: 40 GVWPGRWREIGGR 52
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 98 GCCVRDGCASRCHSCAR 48
GCC GC+ +C C R
Sbjct: 75 GCCCGAGCSEQCAECPR 91
>02_02_0580 +
11757667-11758258,11758419-11758572,11758682-11758756,
11758836-11758980,11759222-11759287,11759347-11759500,
11761506-11761624
Length = 434
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 421 PPA*DTAPPYHHRP 462
PPA APPYHH P
Sbjct: 15 PPARLPAPPYHHSP 28
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 394 PAVTPARQPPPA*DTAPPYHH 456
P+ PA PPP D +PP H
Sbjct: 72 PSQAPAPPPPPTADPSPPLPH 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,122
Number of Sequences: 37544
Number of extensions: 222589
Number of successful extensions: 1055
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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