BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1286 (464 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 29 1.8 12_01_0197 + 1456296-1456668,1456930-1458746 29 2.4 11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 29 2.4 06_01_0136 + 1043888-1044487 29 2.4 01_04_0116 + 16189250-16189411,16189577-16190104 28 3.2 09_04_0508 + 18203079-18203900 28 4.3 04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 4.3 10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 5.6 04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 27 7.4 02_05_0979 + 33268294-33269595 27 7.4 02_05_0686 - 30900748-30902167,30903442-30904742 27 7.4 01_01_0070 - 542603-542686,542803-543441 27 7.4 09_02_0369 - 8012470-8013120 27 9.8 07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 27 9.8 04_04_0801 + 28153971-28154327 27 9.8 04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912 27 9.8 02_04_0413 + 22681957-22682035,22682253-22682788 27 9.8 02_02_0580 + 11757667-11758258,11758419-11758572,11758682-117587... 27 9.8 01_06_0146 + 26969011-26969995,26970878-26970930 27 9.8 >08_01_0051 - 355392-355450,355507-355634,356271-356425, 356883-357012,357600-357739,358384-358552,360286-360557 Length = 350 Score = 29.1 bits (62), Expect = 1.8 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = +2 Query: 23 TSTRVDMRSARRNGSATRSRRERNN 97 +S R D+R+AR +ATRSRR++ N Sbjct: 22 SSQRHDIRTARPTPNATRSRRDQGN 46 >12_01_0197 + 1456296-1456668,1456930-1458746 Length = 729 Score = 28.7 bits (61), Expect = 2.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 331 AQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426 AQP+ C+ L P +CH +P TP PP Sbjct: 202 AQPQTCMTHGLCGPYGICHYSP--TPRCSCPP 231 >11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002, 1510195-1510256,1510406-1510479,1510812-1510864, 1511072-1513550 Length = 1134 Score = 28.7 bits (61), Expect = 2.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 331 AQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426 AQP+ C+ L P +CH +P TP PP Sbjct: 607 AQPQTCMTHGLCGPYGICHYSP--TPRCSCPP 636 >06_01_0136 + 1043888-1044487 Length = 199 Score = 28.7 bits (61), Expect = 2.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 319 TEAQAQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426 T+ + PR CLLG LV +A A + +PPP Sbjct: 2 TKIRGHPRRCLLGALVGAIAATALVIAASFVLRPPP 37 >01_04_0116 + 16189250-16189411,16189577-16190104 Length = 229 Score = 28.3 bits (60), Expect = 3.2 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 370 PVALCHRAPAVTPARQPPPA*DTAPPYHHRP 462 P+ + HR P+ +P PP + TA HHRP Sbjct: 16 PLVVSHRLPSFSPPPLPPVS-GTALCRHHRP 45 >09_04_0508 + 18203079-18203900 Length = 273 Score = 27.9 bits (59), Expect = 4.3 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +1 Query: 361 LVWPVALCHRAPAVTPARQPPPA*D---TAPPYHH 456 ++ PV L AP+ TPA P PA D + P HH Sbjct: 185 VIEPVELFKPAPSPTPAPSPAPAADAPKASKPAHH 219 >04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-698513, 698595-698643,698720-698770,698856-698908,699263-699331, 699874-699928,700011-700099,700217-700302,700376-700432, 700575-700716,701637-702032 Length = 494 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 370 PVALCHRAPAVTPARQPPPA*DTAPP 447 P+ + A + P R PPP+ TAPP Sbjct: 57 PIPIFRAAASSRPPRPPPPSTTTAPP 82 >10_08_0936 - 21679002-21679800,21679893-21680116,21681174-21681361, 21681505-21682597 Length = 767 Score = 27.5 bits (58), Expect = 5.6 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 325 AQAQPRLCLLGDLVWPVALCHRAPAVTPARQPPPA*DTA 441 AQ P L + PV L APA+ P PPP TA Sbjct: 56 AQGHPSLAVSHHTA-PVLLTTAAPALAPTPTPPPPSSTA 93 >04_03_0665 - 18506221-18506271,18506331-18506401,18507097-18507169, 18507476-18507805 Length = 174 Score = 27.1 bits (57), Expect = 7.4 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +2 Query: 353 WGIWCGRWRSVTGRRQSRQHASRLLLE 433 W +WCG RS GRR + S + E Sbjct: 64 WWMWCGLRRSKAGRRGAPVQGSHMSAE 90 >02_05_0979 + 33268294-33269595 Length = 433 Score = 27.1 bits (57), Expect = 7.4 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +1 Query: 340 RLCLLGDLVWPV-ALCHRAPAVTPARQPPPA*DTAPPYHH 456 R C +VW V AL P+ + + +PP A T PP H Sbjct: 185 RCCSPATVVWEVLALDGDEPSPSSSWRPPAAASTTPPPRH 224 >02_05_0686 - 30900748-30902167,30903442-30904742 Length = 906 Score = 27.1 bits (57), Expect = 7.4 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -2 Query: 379 APPATPDPPGDRGGAELEPPSG 314 +PP P P G +GG PP G Sbjct: 363 SPPPPPPPGGKKGGPPPPPPKG 384 >01_01_0070 - 542603-542686,542803-543441 Length = 240 Score = 27.1 bits (57), Expect = 7.4 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 391 APAVTPARQPPPA*DTAPP 447 APAV P PPP APP Sbjct: 74 APAVAPVTPPPPTPKKAPP 92 >09_02_0369 - 8012470-8013120 Length = 216 Score = 26.6 bits (56), Expect = 9.8 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +1 Query: 394 PAVTPARQPPPA*DTAPPYHHR 459 PAV P PPP A PY +R Sbjct: 79 PAVLPPEPPPPRRPAATPYSNR 100 >07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 Length = 260 Score = 26.6 bits (56), Expect = 9.8 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = +2 Query: 356 GIWCGRWRSVTGR 394 G+W GRWR + GR Sbjct: 40 GVWPGRWREIGGR 52 >04_04_0801 + 28153971-28154327 Length = 118 Score = 26.6 bits (56), Expect = 9.8 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = +2 Query: 356 GIWCGRWRSVTGR 394 G+W GRWR + GR Sbjct: 3 GVWPGRWREIGGR 15 >04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912 Length = 103 Score = 26.6 bits (56), Expect = 9.8 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = +2 Query: 356 GIWCGRWRSVTGR 394 G+W GRWR + GR Sbjct: 40 GVWPGRWREIGGR 52 >02_04_0413 + 22681957-22682035,22682253-22682788 Length = 204 Score = 26.6 bits (56), Expect = 9.8 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = -1 Query: 98 GCCVRDGCASRCHSCAR 48 GCC GC+ +C C R Sbjct: 75 GCCCGAGCSEQCAECPR 91 >02_02_0580 + 11757667-11758258,11758419-11758572,11758682-11758756, 11758836-11758980,11759222-11759287,11759347-11759500, 11761506-11761624 Length = 434 Score = 26.6 bits (56), Expect = 9.8 Identities = 10/14 (71%), Positives = 10/14 (71%) Frame = +1 Query: 421 PPA*DTAPPYHHRP 462 PPA APPYHH P Sbjct: 15 PPARLPAPPYHHSP 28 >01_06_0146 + 26969011-26969995,26970878-26970930 Length = 345 Score = 26.6 bits (56), Expect = 9.8 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 394 PAVTPARQPPPA*DTAPPYHH 456 P+ PA PPP D +PP H Sbjct: 72 PSQAPAPPPPPTADPSPPLPH 92 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,884,122 Number of Sequences: 37544 Number of extensions: 222589 Number of successful extensions: 1055 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 945 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1052 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 931320312 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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