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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1286
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35...    29   1.8  
12_01_0197 + 1456296-1456668,1456930-1458746                           29   2.4  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    29   2.4  
06_01_0136 + 1043888-1044487                                           29   2.4  
01_04_0116 + 16189250-16189411,16189577-16190104                       28   3.2  
09_04_0508 + 18203079-18203900                                         28   4.3  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    28   4.3  
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813...    27   5.6  
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071...    27   7.4  
02_05_0979 + 33268294-33269595                                         27   7.4  
02_05_0686 - 30900748-30902167,30903442-30904742                       27   7.4  
01_01_0070 - 542603-542686,542803-543441                               27   7.4  
09_02_0369 - 8012470-8013120                                           27   9.8  
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896     27   9.8  
04_04_0801 + 28153971-28154327                                         27   9.8  
04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912     27   9.8  
02_04_0413 + 22681957-22682035,22682253-22682788                       27   9.8  
02_02_0580 + 11757667-11758258,11758419-11758572,11758682-117587...    27   9.8  
01_06_0146 + 26969011-26969995,26970878-26970930                       27   9.8  

>08_01_0051 -
          355392-355450,355507-355634,356271-356425,
          356883-357012,357600-357739,358384-358552,360286-360557
          Length = 350

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 23 TSTRVDMRSARRNGSATRSRRERNN 97
          +S R D+R+AR   +ATRSRR++ N
Sbjct: 22 SSQRHDIRTARPTPNATRSRRDQGN 46


>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 331 AQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426
           AQP+ C+   L  P  +CH +P  TP    PP
Sbjct: 202 AQPQTCMTHGLCGPYGICHYSP--TPRCSCPP 231


>11_01_0191 +
           1508509-1508749,1508852-1509204,1509860-1510002,
           1510195-1510256,1510406-1510479,1510812-1510864,
           1511072-1513550
          Length = 1134

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 331 AQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426
           AQP+ C+   L  P  +CH +P  TP    PP
Sbjct: 607 AQPQTCMTHGLCGPYGICHYSP--TPRCSCPP 636


>06_01_0136 + 1043888-1044487
          Length = 199

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 319 TEAQAQPRLCLLGDLVWPVALCHRAPAVTPARQPPP 426
           T+ +  PR CLLG LV  +A      A +   +PPP
Sbjct: 2   TKIRGHPRRCLLGALVGAIAATALVIAASFVLRPPP 37


>01_04_0116 + 16189250-16189411,16189577-16190104
          Length = 229

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 PVALCHRAPAVTPARQPPPA*DTAPPYHHRP 462
           P+ + HR P+ +P   PP +  TA   HHRP
Sbjct: 16  PLVVSHRLPSFSPPPLPPVS-GTALCRHHRP 45


>09_04_0508 + 18203079-18203900
          Length = 273

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 361 LVWPVALCHRAPAVTPARQPPPA*D---TAPPYHH 456
           ++ PV L   AP+ TPA  P PA D    + P HH
Sbjct: 185 VIEPVELFKPAPSPTPAPSPAPAADAPKASKPAHH 219


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 370 PVALCHRAPAVTPARQPPPA*DTAPP 447
           P+ +   A +  P R PPP+  TAPP
Sbjct: 57  PIPIFRAAASSRPPRPPPPSTTTAPP 82


>10_08_0936 -
           21679002-21679800,21679893-21680116,21681174-21681361,
           21681505-21682597
          Length = 767

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 325 AQAQPRLCLLGDLVWPVALCHRAPAVTPARQPPPA*DTA 441
           AQ  P L +      PV L   APA+ P   PPP   TA
Sbjct: 56  AQGHPSLAVSHHTA-PVLLTTAAPALAPTPTPPPPSSTA 93


>04_03_0665 -
           18506221-18506271,18506331-18506401,18507097-18507169,
           18507476-18507805
          Length = 174

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 353 WGIWCGRWRSVTGRRQSRQHASRLLLE 433
           W +WCG  RS  GRR +    S +  E
Sbjct: 64  WWMWCGLRRSKAGRRGAPVQGSHMSAE 90


>02_05_0979 + 33268294-33269595
          Length = 433

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 340 RLCLLGDLVWPV-ALCHRAPAVTPARQPPPA*DTAPPYHH 456
           R C    +VW V AL    P+ + + +PP A  T PP  H
Sbjct: 185 RCCSPATVVWEVLALDGDEPSPSSSWRPPAAASTTPPPRH 224


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 379 APPATPDPPGDRGGAELEPPSG 314
           +PP  P P G +GG    PP G
Sbjct: 363 SPPPPPPPGGKKGGPPPPPPKG 384


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 391 APAVTPARQPPPA*DTAPP 447
           APAV P   PPP    APP
Sbjct: 74  APAVAPVTPPPPTPKKAPP 92


>09_02_0369 - 8012470-8013120
          Length = 216

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 394 PAVTPARQPPPA*DTAPPYHHR 459
           PAV P   PPP    A PY +R
Sbjct: 79  PAVLPPEPPPPRRPAATPYSNR 100


>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
          Length = 260

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 356 GIWCGRWRSVTGR 394
           G+W GRWR + GR
Sbjct: 40  GVWPGRWREIGGR 52


>04_04_0801 + 28153971-28154327
          Length = 118

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 356 GIWCGRWRSVTGR 394
           G+W GRWR + GR
Sbjct: 3   GVWPGRWREIGGR 15


>04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912
          Length = 103

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 356 GIWCGRWRSVTGR 394
           G+W GRWR + GR
Sbjct: 40  GVWPGRWREIGGR 52


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 98  GCCVRDGCASRCHSCAR 48
           GCC   GC+ +C  C R
Sbjct: 75  GCCCGAGCSEQCAECPR 91


>02_02_0580 +
           11757667-11758258,11758419-11758572,11758682-11758756,
           11758836-11758980,11759222-11759287,11759347-11759500,
           11761506-11761624
          Length = 434

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 421 PPA*DTAPPYHHRP 462
           PPA   APPYHH P
Sbjct: 15  PPARLPAPPYHHSP 28


>01_06_0146 + 26969011-26969995,26970878-26970930
          Length = 345

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 394 PAVTPARQPPPA*DTAPPYHH 456
           P+  PA  PPP  D +PP  H
Sbjct: 72  PSQAPAPPPPPTADPSPPLPH 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,122
Number of Sequences: 37544
Number of extensions: 222589
Number of successful extensions: 1055
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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