Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1286
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    30   0.71 
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    28   3.8  
U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine rece...    27   5.0  
Z49967-4|CAA90250.1|  287|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    27   6.6  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    27   6.6  
Z83236-3|CAB05779.1|  379|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 370 PVALCHRAPAVTPARQPPPA*DTAPPYHHR 459
           P AL    PA  PA QPPPA    P Y  +
Sbjct: 153 PSALASARPAPFPAAQPPPAPTPTPSYQQQ 182


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical protein
            C01F4.2a protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 14   RSLTSTRVDMRSARRNGSATRSRRERN 94
            RS +  RVD+RSA R+ +A   RR RN
Sbjct: 939  RSPSRERVDIRSAARSSAAAARRRLRN 965


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 382 RAPPATPDPPGDRGGAELEPP 320
           R PP  P PPG++G  +L PP
Sbjct: 479 RGPPGLPGPPGEKG--DLGPP 497


>U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 2 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 246 VTKLRVRCHRDDHMGGFTQYTVYPGLYIISRTYS 145
           +  + VR   +D  GG+  YTV  G++I   TY+
Sbjct: 261 IATIFVRTIGEDFFGGYIHYTVARGVHITVPTYN 294


>Z49967-4|CAA90250.1|  287|Caenorhabditis elegans Hypothetical
           protein F54C9.4 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 376 PPATPDPPGDRGGAELEPPSGE 311
           PP  P PPG  GG   + PSG+
Sbjct: 98  PPGPPGPPGLPGGRGDQGPSGD 119


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 243 TKLRVRCHRDDHMGGFTQYTVYPGLYIISRTYSFL 139
           T L +R    D   GF  YTV  G+Y  + TY+ +
Sbjct: 258 TILLIRTVGPDFFRGFINYTVMRGVYCATPTYNLV 292


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 379 APPATPDPPGDRGGAELEPPSG 314
           +PP  P PPG  G A  E P+G
Sbjct: 214 SPPGLPGPPGPCGEAGREGPNG 235


>Z83236-3|CAB05779.1|  379|Caenorhabditis elegans Hypothetical
           protein K10H10.3a protein.
          Length = 379

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 228 RCHRDDHMGGFTQYTVYPG 172
           + HRD++  G + Y+V+PG
Sbjct: 268 KLHRDEYKNGISTYSVHPG 286


>Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical
           protein F33A8.9 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 376 PPATPDPPGDRGGAELEPPSGE 311
           PP  P PPG+ GG     P G+
Sbjct: 239 PPGPPGPPGNPGGIGPRGPPGD 260


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 98  GCCVRDGCASRCHSCARFACRPSC 27
           GCC   GC      C    CRP C
Sbjct: 50  GCCGCCGCGGGGGGCGCCCCRPRC 73


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 98  GCCVRDGCASRCHSCARFACRPSC*SATG 12
           GC     CA+ C S     CRP+C S+ G
Sbjct: 28  GCQASSSCANSCRS----TCRPTCSSSGG 52


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 98  GCCVRDGCASRCHSCARFACRPSC 27
           GCC   GC      C    CRP C
Sbjct: 52  GCCGCCGCGGGGGGCGCCCCRPRC 75


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 98  GCCVRDGCASRCHSCARFACRPSC 27
           GCC   GC      C    CRP C
Sbjct: 55  GCCGCCGCGGGGGGCGCCCCRPRC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,026,720
Number of Sequences: 27780
Number of extensions: 155872
Number of successful extensions: 885
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)