Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1286
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43770.1 68418.m05353 proline-rich family protein contains pr...    27   6.2  
At4g01370.1 68417.m00177 mitogen-activated protein kinase, putat...    27   6.2  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    27   8.3  
At1g48420.1 68414.m05412 desulfhydrase family similar to similar...    27   8.3  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    27   8.3  

>At5g43770.1 68418.m05353 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 187

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 358 DLVWPVALCHRAPAVTPARQPPPA*DTAPP 447
           D+V P+    R P + P   PPP  D  PP
Sbjct: 152 DVVPPIWEPPRPPDIFPPESPPPGIDPPPP 181


>At4g01370.1 68417.m00177 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK4) identical to mitogen-activated
           protein kinase homolog (AtMPK4)[Arabidopsis thaliana]
           SWISS-PROT:Q39024; PMID:12119167
          Length = 376

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 210 HMGGFTQYTVYPGLYIISRTY 148
           H G + QY VY  L+ +SR Y
Sbjct: 22  HGGSYVQYNVYGNLFEVSRKY 42


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 376 ALCHRAPAVTPA---RQP-PPA*DTAPPYHH 456
           AL H     TPA    QP PPA + APP HH
Sbjct: 391 ALNHHTAPPTPAPHRSQPHPPAPNPAPPRHH 421


>At1g48420.1 68414.m05412 desulfhydrase family similar to similar
          to D-cysteine desulfhydrase (EC 4.4.1.15).
          (Swiss-Prot:P59329) [Escherichia coli O6]; contains
          TIGRFAM TIGR01275: pyridoxal phosphate-dependent
          enzymes, D-cysteine desulfhydrase family profile
          Length = 401

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 11 GRSLTSTRVDMRSARRNGSAT 73
          GRSLT +RV +  ARR+ SAT
Sbjct: 3  GRSLTLSRVKLELARRSMSAT 23


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 391 APAVTPARQPPP-A*DTAPPYHHRP 462
           APA +P+  PPP A  TAPP    P
Sbjct: 47  APAPSPSANPPPSAPTTAPPVSQPP 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,592,049
Number of Sequences: 28952
Number of extensions: 149505
Number of successful extensions: 493
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)