Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1284
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.4  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    24   7.6  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    24   7.6  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    24   7.6  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 218 LIXMNLDNFCRSLXKYRRXHLSN 286
           L+ +N  N   +L KY++ HL N
Sbjct: 286 LLNVNSQNLTSTLEKYKKMHLQN 308


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 298 DKADI*KMXSPVLXQRSAKVIQIHXN*RLRTQGPPSIGFDLIKALIP 158
           D  D+  +   ++ Q   K   IH +  L  +  PS GF +I++L+P
Sbjct: 380 DMDDVECICVSLIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 92  LSYLDNXGNSRANTC 136
           ++YLD   NSR NTC
Sbjct: 75  VNYLDETPNSRYNTC 89


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 169 LLLDQNQSTEGLAXEVVNXDESG*LLQIAGQVPATXSFKCLPYQL 303
           L+ D++ S       VVN DE+  + +I    P   +FK + Y L
Sbjct: 367 LMEDEDLSYMDDMSNVVNEDENLIIDEIPSNTPQKGNFKLVEYML 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,184,034
Number of Sequences: 5004
Number of extensions: 17784
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)