Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1284
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   3.9  
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644...    27   5.2  
01_06_1183 - 35176780-35177266,35179631-35181093                       26   9.1  

>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 128 NTCNQNSDQ*WDECFY*IKTNRRR 199
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


>05_03_0449 -
           14161812-14162902,14163121-14163153,14164248-14164457,
           14166348-14167011,14167129-14167287,14167449-14167563,
           14167672-14167867,14167965-14168286,14168695-14168865,
           14169486-14169495,14169932-14170285,14172429-14172553
          Length = 1149

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 208 TQGPPSIGFDLIKALIPSLVRVLIACISSRIT 113
           +QGPP+  +++++A+   L  VL AC   R++
Sbjct: 668 SQGPPATAWEVLEAVPFVLETVLAACAHGRLS 699


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 203 RPSVD-WF*SNKSTHPITGQ 147
           R S+D WF S KST P TGQ
Sbjct: 301 RESIDRWFSSGKSTCPKTGQ 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,251
Number of Sequences: 37544
Number of extensions: 114699
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)