Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1284
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    28   1.6  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    26   6.3  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    26   6.3  

>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 212 KSLIXMNLDNFCRSLXKYRRXHLSNVCLINFRW*FLRLPWLS 337
           K L   N   +C  + K     ++ +C+I F W F +L +++
Sbjct: 8   KFLTINNFSRYCLKIVKVHIIWITIICIIYFNWRFKKLDFMA 49


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  SYXVTWITXVILELIHAIRTLTSDGMS 167
           SY V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 263 TXPAICKSYPDSSXLTTSXARPSVDWF 183
           T P  C+  P+S  +T + A P+  W+
Sbjct: 686 TNPGACQGLPESEGVTGAPAPPTSRWY 712


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 263  TXPAICKSYPDSSXLTTSXARPSVDWF 183
            T P  C+  P+S  +T + A P+  W+
Sbjct: 1104 TNPGACQGLPESEGVTGAPAPPTSRWY 1130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,461,976
Number of Sequences: 27780
Number of extensions: 95838
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)