Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1284
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   7.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   7.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   7.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   7.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   9.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   9.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 18  MXQCKPY*GDTANGSIYQFWFLRSYXVTWITXVILELIHAIRTLT 152
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 119 NYXSYPSNXVRSKEPELI 66
           NY  YP N  R+ E   I
Sbjct: 175 NYVEYPQNSKRNSEESAI 192


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 24  QCKPY*GDTANGSIYQFWFLRSY 92
           +C  Y  D +   +YQ++ LR Y
Sbjct: 140 RCLHYTVDKSKPKVYQWFDLRKY 162


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 24  QCKPY*GDTANGSIYQFWFLRSY 92
           +C  Y  D +   +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  LRRYREWLNISVLVP*ILLSYL 103
           LRR   +  ++++VP + +SYL
Sbjct: 231 LRRKTLFYTVNLIVPCVSISYL 252


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 24  QCKPY*GDTANGSIYQFWFLRSY 92
           +C  Y  D +   +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 113 GNSRANTCN 139
           GNSRANT N
Sbjct: 131 GNSRANTYN 139


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 190 IGFDLIKALIPSLVRVLIACIS 125
           +GF ++   IPS++ V+I+ +S
Sbjct: 231 MGFFMMDYYIPSILIVVISWVS 252


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = -3

Query: 193 SIGFDLIKALIPSLVRVLIACIS 125
           +IG+ + +  +PS++ V+++ +S
Sbjct: 240 NIGYFVFQTYLPSILIVMLSWVS 262


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 145 VLIACISSRITXVIQVTX*DLRNQN*YIE 59
           VL++  +S+ T  ++     LRN++ YI+
Sbjct: 438 VLLSPEASKATEAVEFIAEHLRNEDLYIQ 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,212
Number of Sequences: 438
Number of extensions: 1225
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)