Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1284
         (345 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    31   0.27 
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    27   3.4  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 281 KDXVAGTXPAICKSYPDSSXLTTSXARPSVDWF*SNKSTHPITGQSSD 138
           K+   GT  A+     DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 210 KEYDQGTYQALVS---DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = -3

Query: 292 ADI*KMXSPVLXQRSAKVIQIHXN*RLRTQGPPSIGFDLIKALIPSLVRVLIACISSRIT 113
           +D+    S +L   + +V++ H   RL ++   ++  DL+  ++PS+  V+  C      
Sbjct: 294 SDLVSKVSALLTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTF 351

Query: 112 XVIQ 101
            ++Q
Sbjct: 352 SIVQ 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,163,264
Number of Sequences: 28952
Number of extensions: 92148
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)