Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1283
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    29   0.59 
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.4  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   5.5  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.3  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   9.6  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 389 TAVATTLAFQMTREECLRAHPYVFSSKRLNRKSI 490
           +A AT+L FQ  R+ CLR +   F+S  +NR ++
Sbjct: 3   SAKATSLLFQGFRKNCLRLNRISFASGLINRFTV 36


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 644 PLKVTVISYSKFGPVSNMSLTPXENGTDTSVPSPTRAGAG 525
           P++   ++YSK  P +  SLT     T+ S+P P   G G
Sbjct: 677 PVQPVPLAYSKPAPTTKSSLTELAYNTNVSLP-PRSPGTG 715


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 3   GNAEITLLAPRRSPAVGHDPIFIFGVLSPTHDP 101
           GNA +   AP  +   G  P  +F  +SP +DP
Sbjct: 42  GNAPLFTQAPPHTNPQGPPPFPLFNSISPVYDP 74


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 381 TSLLTLSRHTAWSASSVSLTKALSLNVELAMTAGGT 274
           T +L  +R  A   S V  T    +NV++ +T GGT
Sbjct: 115 TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGT 150


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = -2

Query: 239 DIMYDIMTSGPALGIMTVYQD-----FFHYREGI 153
           DI Y +  + P+L +  V QD     F+HY++ I
Sbjct: 303 DITYPVAETAPSLVVKVVNQDYEVKVFYHYKDNI 336


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -1

Query: 360 RHTAWSASSVSLTKALSLNVELAMTAGGTESEFPSDQQXXXXXXXXHDF-GTCAGYNDGV 184
           RH  ++ SS   TK      EL+M+A    S+ P  +          +  G+       +
Sbjct: 567 RHLLFNTSSTDNTK------ELSMSASSENSDCPHKEGECVGSFCNINAKGSSLNNIPKL 620

Query: 183 PRFLPLPRRYIPSHQ 139
           PRF+P+P  +   +Q
Sbjct: 621 PRFVPVPSEFFKKNQ 635


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 503 GNDTAQSDPHQPWSAM 550
           GN T  +DP +PW++M
Sbjct: 166 GNSTYGTDPSKPWASM 181


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 401 TTLAFQMTREECLRAHPYVFSSKRLNRKS 487
           TT    +T+  CL+   Y FSS  + R++
Sbjct: 510 TTECIYLTKSSCLKIGNYAFSSPYIERQT 538


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 501  LAMTRPNQTRTSPGRRWD*CIRTILVW 581
            L   RPN T    GR  D  I+++L+W
Sbjct: 947  LTSNRPNSTLFGKGRVKDLGIQSVLIW 973


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,450
Number of Sequences: 5004
Number of extensions: 60724
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)