Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1283
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 588 FDAXREWYGYISPIADQGWCGSDWAVSLPALSAIDFRFNLLE 463
           +D  R+  GY  P     W    W ++ PA+    F FN+++
Sbjct: 476 YDGIRDMIGYY-PCC---WWKICWTITTPAICVGVFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 588 FDAXREWYGYISPIADQGWCGSDWAVSLPALSAIDFRFNLLE 463
           +D  R+  GY  P     W    W ++ PA+    F FN+++
Sbjct: 529 YDGIRDMIGYY-PCC---WWKICWTITTPAICVGVFTFNIIK 566


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 368 LCQDTRLGQRAVF 330
           LC DTRL + AVF
Sbjct: 68  LCADTRLNKLAVF 80


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 492 PTMLAMTRPNQTRTSPGRRWD*CIRTILVWRQTHIGYWAEL 614
           PT+L M RP +TR     RW   I  + +   T+ G   EL
Sbjct: 343 PTILMMRRPKKTRL----RWMMEIPNVTLPTSTYSGSPTEL 379


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 322 EGAVTQCRIGNDC 284
           + AV QC+ GN+C
Sbjct: 217 KNAVYQCKYGNNC 229


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 322 EGAVTQCRIGNDC 284
           + AV QC+ GN+C
Sbjct: 14  KNAVYQCKYGNNC 26


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -2

Query: 587 LTPXENGTDTSVPSPTRAGAGLIGPCHCQHCRR*IF 480
           L P +      + SP     G+IGP  C    + +F
Sbjct: 346 LNPTDKMLVQDISSPDAVEYGIIGPTTCMGDHKPVF 381


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 507 MTRPNQTRTSPGRRW 551
           + R N T  SPGR W
Sbjct: 906 VARSNVTPRSPGRAW 920


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = +3

Query: 105 AVEAAHQLIPVPGVTVYTFSVVEEILVHRHYTQRRSRSHDVVH 233
           A E   Q  P P   +Y+  +V   ++ R        SH +++
Sbjct: 222 APEVIKQNRPTPAADIYSLGIVAWQMLFRKLPFAGLHSHTIIY 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,833
Number of Sequences: 438
Number of extensions: 4495
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)