Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1281
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 32 0.090
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 30 0.27
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 29 0.63
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 29 0.84
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.5
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 27 2.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 3.4
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 27 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.4
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 27 3.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.5
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 4.5
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 26 4.5
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 26 5.9
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 25 7.8
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 7.8
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 25 7.8
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 31.9 bits (69), Expect = 0.090
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +2
Query: 83 NVPPLPT--NSYNVGPNFWTSRGVSERPSRLLQIASNNWILTRAPEGVHWTPDMHSRNFK 256
NVPP T N YN PNF S G ++ ++ + N L PE P +
Sbjct: 215 NVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQPELQNRNVHLETVPESYPVPPSGYPLTSS 274
Query: 257 RCRKSGRQP 283
C S QP
Sbjct: 275 TCVSSISQP 283
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 538 AEHV*SSDFSMETSICCRSSSILSDTRSNSETISSMSASRAARVCRNL 395
A H+ S D T SSI++ T+ N I +M A ++ CRN+
Sbjct: 5 ASHLTSIDTESSTRTASPVSSIVTPTKRNVVGICAMDAKARSKPCRNI 52
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 582 ETSAVKVFTLSSSSSPNTYKVLTLAWRPLFAVGARRSSQTRGRIQKQY 439
+ S + +L SSS P + ++ R + +V R S ++GRI+ Q+
Sbjct: 206 KNSNASIHSLGSSSRPTLTRTPSITSRSVNSVTERSKSLSKGRIENQF 253
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 28.7 bits (61), Expect = 0.84
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +3
Query: 285 DELLEHADFVVSLLRGHSKEAADDTEK------NVKDLVEAYERLRQTLAARLADIEDIV 446
++ L+H + V LLR H+++ + EK N++ + ++L+ ++ L+ ED
Sbjct: 288 EKQLKHEESQVELLRTHNRQMTETLEKYKSLDFNMEKEGDVIQQLKSSIKKPLSGAEDEQ 347
Query: 447 SEFDRVSERIDELRQQIEV 503
S+ ++L++ +E+
Sbjct: 348 KSRSMFSKNDEKLKKSLEL 366
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 523 SSDFSMETSICCRSSSILSDTRSNSETISSMSAS 422
SS + TS SSS+ S SNS T SS+++S
Sbjct: 197 SSSLNSTTSATATSSSLSSTAASNSATSSSLASS 230
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = +3
Query: 252 SSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLAD 431
+SD+ SL + ++ E D ++SLL+ +S E D TE+ KD ++R +
Sbjct: 81 NSDITSLSNRIFKVEEKLDLILSLLK-NSSEPLDRTER--KDFPSLAMQIRDANSLVNTK 137
Query: 432 IEDIVSEFDRVSER 473
+++ F+ S++
Sbjct: 138 LKEYSRRFELPSQK 151
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 523 SSDFSMETSICCRSSSILSDTRSNSETISSMSASRAA 413
+S S +SI SSS S S S TISS S+S ++
Sbjct: 263 ASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSS 299
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 523 SSDFS--METSICCRSSSILSDTRSNSETISSMSAS 422
SS FS + +S SSS S S+S TISS S+S
Sbjct: 314 SSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSS 349
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 236 CLVSNARLLVLGLVSNCLRRSEAAVMAAPRLLWTSKSWVQRCSCWSAVAARLAKPS 69
CL+ + + + CLR S+ AV A +L + + + +C C + ++ L S
Sbjct: 323 CLLKSCKNITYIDFGGCLRLSDIAVSAIAKLPYLQRVGLVKCICLTDLSVILLSGS 378
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 CEGLAKRAATA--DQQLQRWTQLLDVQRSLGAAITAASDRLKQLDT 198
CEG ++ D+QL+ W Q ++ L + + SD+LK+L T
Sbjct: 231 CEGWVNSTSSYGYDEQLKLWVQPDLIKGFLTSVMKTNSDKLKKLKT 276
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 618 SSVKVLVRSTSSETSAVKVFTLSSSSSPNTYKVLTLAWRPLFAVGARRSSQT 463
+S +V STSS T T S SSS ++Y + +V +R+SS +
Sbjct: 718 NSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSS 769
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 312 VVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLADIEDIVSEFDRVSERIDELRQ 491
V+++L +A DT + L+E ++ Q L R EDI + D ++ +DE +
Sbjct: 269 VLAILVNLIDKAPKDTISTM--LLEHVDKAVQLLQKRKWADEDITNYLDFITSTLDESSK 326
Query: 492 QIEV-SMLKSELYT 530
+ M KSEL T
Sbjct: 327 HLSTFDMYKSELDT 340
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 351 DDTEKNVKDLVEAYERLRQTLAARLADIEDIVSEFDRVSERIDELRQQIEVSMLKSE 521
D K +KD + + LR L + ++++ + D+ + ++ LR+QI+ SE
Sbjct: 451 DFQNKKIKDFEKIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSE 507
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/84 (21%), Positives = 37/84 (44%)
Frame = +3
Query: 252 SSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLAD 431
S + S++ DE L + + + + H K + E L+ + ERL L +
Sbjct: 968 SQAITSVKSKLDETLSKSSKLEADIE-HLKNKVSEVEVERNALLASNERLMDDLKNNGEN 1026
Query: 432 IEDIVSEFDRVSERIDELRQQIEV 503
I + +E ++ D+L+ ++ V
Sbjct: 1027 IASLQTEIEKKRAENDDLQSKLSV 1050
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +3
Query: 267 SLEDSRDELLEHADFVVSLLRG--HSKEAADDTEKNVKDLVEAYERLRQTLAARLADIED 440
SL +LL + + L + ++ + D N + VEA+++ + L + +++D
Sbjct: 665 SLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSINQNLQD 724
Query: 441 IVSEFD-RVSERIDELRQQIEVS-MLKSEL 524
I+S D R S+ +EL ++ LK EL
Sbjct: 725 IISRQDQRASKFAEELLHVNSLAERLKGEL 754
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 372 KDLVEAYERLRQTLAARLADIEDIVSEFDRVSERIDELRQQIEV 503
++ + +LR D++D+V EF + ++ +ELR +++
Sbjct: 236 REKTNVFNQLRADKKKLKKDLKDLVEEFQPILDKGEELRSDLKL 279
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -2
Query: 597 RSTSSETSAVKVFTLSSSSSPNTYKVLTLAWR---PLFAVGARR-SSQTRGRIQ 448
R+ +S T +K F+LSSSSS T ++ + + P + AR+ SS GR Q
Sbjct: 257 RNEASNTGPMKKFSLSSSSSQITKEIRDINFNCIGPYLSKIARKLSSDFEGRRQ 310
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = -3
Query: 482 LVDPLRHAVEFRNNILYVREPRRXXXXXXXXXLDEVFHVLLGVIGGFLRVAPEQRHDKVG 303
++DP F+ N++ + LD F+VL+ + +L +A E D
Sbjct: 334 ILDPKSSTFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLYLYLSIARESADDFAN 393
Query: 302 VFQQLIAAVFQTC 264
+ + + ++F++C
Sbjct: 394 ITKAVDPSLFESC 406
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -3
Query: 299 FQQLIAAVFQTCDIA*SSWSACLVSNARLLVLGLVSNCLRRSEAAVMAAPRLLWTSKSWV 120
F + + + +A S++ A VS+ +++ L+ +RRS A + ++ K W
Sbjct: 73 FDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWH 132
Query: 119 QRCS 108
R S
Sbjct: 133 VRAS 136
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 494 NRGLHAKVRTLYVFGEDEEDNVKTLTAEVSELVERTKTFTEE 619
N LH + + D + +K TA EL+ +T +F +E
Sbjct: 682 NFSLHKALEVMRETSSDLDKQLKDATASQKELIVQTSSFQKE 723
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 282 RDELLE--HADFVVSLLRGHSKEAADDTEKNVKDLVEAY-ERLRQTLAARLADIEDIVSE 452
+DEL++ HAD V ++ + +DLV ERL A + + I SE
Sbjct: 106 QDELIDAFHADCVELEQYLNAIRVLSEVSPRTRDLVIGMGERLSCRFMAAVLKDQGIDSE 165
Query: 453 FDRVSERIDELRQ 491
F +S IDE R+
Sbjct: 166 FIDMSHIIDEQRE 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,746
Number of Sequences: 5004
Number of extensions: 55077
Number of successful extensions: 253
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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